Gene detail information of Glyur001042s00036967.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G57790.1 | 2.00E-35 | F-box family protein |
| NR | XP_004494038.1 | 2.02E-156 | PREDICTED: F-box/kelch-repeat protein At1g57790-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9LXZ3|FB204_ARATH | 5.00E-44 | F-box protein At3g56470 |
| trEMBL | tr|I3SWK4|I3SWK4_MEDTR | 2.00E-149 | Uncharacterized protein {ECO:0000313|EMBL:AFK44646.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01042 | 70450 | 71506 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001042s00036967.1 | PF12937.2 | F-box-like | 13 | 47 | 6.50E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.913 |
| SRR1783600 | control | 4.977 |
| SRR1783602 | moderate drought stress | 5.737 |
| SRR1811619 | moderate drought stress | 5.314 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.835 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.876 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.574 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.212 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.895 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.925 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.327 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.637 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.122 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.233 |
| SRR2967015 | Control (Tissue:root) | 5.310 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.556 |
| SRR9715740 | Leave | 8.006 |
| SRR9715741 | Leave | 16.122 |
| SRR9715739 | Root | 2.921 |
| SRR9715742 | Root | 7.196 |
| SRR9715743 | Root | 7.802 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.723 |
| SRR8749028 | MeJA induced 9h | 8.753 |
| SRR8749029 | MeJA induced 9h | 4.394 |
| SRR8749030 | Uninduced | 5.594 |
| SRR8749031 | Uninduced | 5.586 |
| SRR8749032 | Uninduced | 5.686 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 12.629 |
| SRR8400027 | Control-Root | 13.293 |