Gene detail information of Glyur001045s00038914.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G43800.1 | 1.00E-84 | Plant stearoyl-acyl-carrier-protein desaturase family protein |
| NR | XP_003602138.1 | 1.63E-120 | Stearoyl acyl carrier protein desaturase [Medicago truncatula] |
| COG | YP_006369323.1 | 1.00E-15 | Fatty acid desaturase [Modestobacter marinus] |
| Swissprot | tr|Q84VY3|STAD6_ARATH | 1.00E-103 | Acyl-[acyl-carrier-protein] desaturase 6, chloroplastic (Precursor) |
| trEMBL | tr|G7J5N5|G7J5N5_MEDTR | 6.00E-121 | Acyl-[acyl-carrier-protein] desaturase {ECO:0000256|RuleBase:RU000582} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01045 | 78975 | 80538 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K03921 | FAB2, SSI2, desA1 | EC:1.14.19.2 1.14.19.11 1.14.19.26 | Fatty acid metabolism | map01212 |
| Fatty acid biosynthesis | map00061 | |||
| Biosynthesis of unsaturated fatty acids | map01040 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001045s00038914.1 | PF03405.9 | FA_desaturase_2 | 53 | 237 | 2.20E-92 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.152 |
| SRR1783600 | control | 0.254 |
| SRR1783602 | moderate drought stress | 0.069 |
| SRR1811619 | moderate drought stress | 0.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.268 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.232 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.474 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.631 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.160 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.098 |
| SRR9715740 | Leave | 1.513 |
| SRR9715741 | Leave | 0.183 |
| SRR9715739 | Root | 0.278 |
| SRR9715742 | Root | 0.254 |
| SRR9715743 | Root | 0.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.033 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.567 |
| SRR8400027 | Control-Root | 1.240 |