Gene detail information of Glyur001048s00031765.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G60540.12.00E-91pyridoxine biosynthesis 2
NRXP_004506773.13.88E-137PREDICTED: pyridoxal biosynthesis protein PDX2-like [Cicer arietinum]
COGYP_005441479.13.00E-57putative glutamine amidotransferase subunit PdxT [Caldilinea aerophila DSM 14535 = NBRC 104270]
Swissprottr|Q8LAD0|PDX2_ARATH2.00E-114Pyridoxal biosynthesis protein PDX2
trEMBLtr|I3SUR2|I3SUR2_LOTJA8.00E-135Uncharacterized protein {ECO:0000313|EMBL:AFK44004.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold010481681522370-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K08681pdxT, pdx2 EC:4.3.3.6 Vitamin B6 metabolism map00750


Gene Ontology

biological_process

GO:0042819  vitamin B6 biosynthetic process

GO:0042823  pyridoxal phosphate biosynthetic process


molecular_function

GO:0004359  glutaminase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001048s00031765.1PF01174.14SNO62031.20E-39


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.005
SRR1783600control9.977
SRR1783602moderate drought stress6.469
SRR1811619moderate drought stress6.345

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain18.204
DRR006520Root Summer glycyrrhizin high producing strain17.886
DRR006521Root Winter glycyrrhizin high producing strain27.036
DRR006522Root Winter glycyrrhizin high producing strain27.551
DRR006523Root Summer glycyrrhizin low producing strain12.246
DRR006524Root Summer glycyrrhizin low producing strain13.794
DRR006525Leaf Summer glycyrrhizin high producing strain103.158
DRR006526Leaf Summer glycyrrhizin high producing strain102.231

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)23.483
SRR2868004Drought Stress(Tissue:root)23.017
SRR2967015Control (Tissue:root)18.135

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave75.872
SRR9715740Leave109.972
SRR9715741Leave76.065
SRR9715739Root7.619
SRR9715742Root13.648
SRR9715743Root12.811

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h51.634
SRR8749028MeJA induced 9h29.181
SRR8749029MeJA induced 9h79.574
SRR8749030Uninduced10.733
SRR8749031Uninduced10.147
SRR8749032Uninduced18.393

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root21.982
SRR8400027Control-Root22.526

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved