Gene detail information of Glyur001049s00033660.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G25900.1 | 1.00E-133 | Homocysteine S-methyltransferase family protein |
| NR | AFK33865.1 | 0 | unknown [Lotus japonicus] |
| COG | YP_002462221.1 | 1.00E-80 | homocysteine methyltransferase [Chloroflexus aggregans DSM 9485] |
| Swissprot | tr|A4ZGQ8|HMT1_BRAOT | 5.00E-170 | Homocysteine S-methyltransferase 1 |
| trEMBL | tr|I3S0S3|I3S0S3_LOTJA | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK33865.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01049 | 2541 | 14482 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00547 | mmuM, BHMT2 | EC:2.1.1.10 | Cysteine and methionine metabolism | map00270 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001049s00033660.1 | PF02574.11 | S-methyl_trans | 22 | 305 | 1.50E-64 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.336 |
| SRR1783600 | control | 1.314 |
| SRR1783602 | moderate drought stress | 0.852 |
| SRR1811619 | moderate drought stress | 0.844 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.704 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.617 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.531 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.222 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.700 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.746 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.513 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.502 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.497 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.600 |
| SRR2967015 | Control (Tissue:root) | 3.451 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.467 |
| SRR9715740 | Leave | 4.485 |
| SRR9715741 | Leave | 6.211 |
| SRR9715739 | Root | 2.605 |
| SRR9715742 | Root | 2.126 |
| SRR9715743 | Root | 2.322 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 34.979 |
| SRR8749028 | MeJA induced 9h | 26.819 |
| SRR8749029 | MeJA induced 9h | 43.103 |
| SRR8749030 | Uninduced | 67.512 |
| SRR8749031 | Uninduced | 54.645 |
| SRR8749032 | Uninduced | 46.725 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.902 |
| SRR8400027 | Control-Root | 4.710 |