Gene detail information of Glyur001052s00025671.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G19790.1 | 2.00E-13 | related to AP2 11 |
| NR | XP_004510866.1 | 2.37E-132 | PREDICTED: ethylene-responsive transcription factor ABR1-like [Cicer arietinum] |
| Swissprot | tr|Q6J9S1|RA211_ARATH | 2.00E-25 | Ethylene-responsive transcription factor RAP2-11 |
| trEMBL | tr|A0A072TZK4|A0A072TZK4_MEDTR | 5.00E-125 | AP2 domain class transcription factor {ECO:0000313|EMBL:KEH18970.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01052 | 2101 | 3102 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ERF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001052s00025671.1 | PF00847.15 | AP2 | 15 | 65 | 2.80E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.036 |
| SRR1783600 | control | 0.110 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.110 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.221 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.031 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.629 |
| SRR2967015 | Control (Tissue:root) | 1.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.024 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.524 |
| SRR8400027 | Control-Root | 0.258 |