Gene detail information of Glyur001052s00025674.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G03390.1 | 1.00E-16 | STRUBBELIG-receptor family 3 |
| NR | NP_001237380.1 | 6.85E-21 | LRR receptor-like kinase [Glycine max] |
| Swissprot | tr|Q6R2K3|SRF3_ARATH | 2.00E-18 | Protein STRUBBELIG-RECEPTOR FAMILY 3 (Precursor) |
| trEMBL | tr|K7LU51|K7LU51_SOYBN | 6.00E-22 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G11835.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01052 | 10736 | 11885 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.1.1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001052s00025674.1 | PF07714.12 | Pkinase_Tyr | 41 | 68 | 4.50E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.297 |
| SRR1783600 | control | 4.961 |
| SRR1783602 | moderate drought stress | 7.085 |
| SRR1811619 | moderate drought stress | 5.382 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.699 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.115 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.587 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.737 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.105 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.296 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.337 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.489 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.866 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.982 |
| SRR2967015 | Control (Tissue:root) | 1.599 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.539 |
| SRR9715740 | Leave | 0.408 |
| SRR9715741 | Leave | 0.444 |
| SRR9715739 | Root | 0.731 |
| SRR9715742 | Root | 1.074 |
| SRR9715743 | Root | 0.659 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.892 |
| SRR8749028 | MeJA induced 9h | 6.666 |
| SRR8749029 | MeJA induced 9h | 7.272 |
| SRR8749030 | Uninduced | 0.884 |
| SRR8749031 | Uninduced | 0.664 |
| SRR8749032 | Uninduced | 0.280 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.740 |
| SRR8400027 | Control-Root | 6.319 |