Gene detail information of Glyur001052s00025677.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G61060.1 | 4.00E-101 | phloem protein 2-A13 |
| NR | KEH17679.1 | 5.13E-176 | F-box protein PP2-A13 [Medicago truncatula] |
| Swissprot | tr|Q9LEX0|P2A13_ARATH | 9.00E-126 | F-box protein PP2-A13 |
| trEMBL | tr|A0A072TJF7|A0A072TJF7_MEDTR | 2.00E-176 | F-box protein PP2-A13 {ECO:0000313|EMBL:KEH17679.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01052 | 27740 | 30117 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001052s00025677.1 | PF14299.1 | PP2 | 119 | 274 | 2.20E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.954 |
| SRR1783600 | control | 0.961 |
| SRR1783602 | moderate drought stress | 1.931 |
| SRR1811619 | moderate drought stress | 1.938 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.389 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.475 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 57.735 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 55.596 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.208 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.916 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.017 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.946 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.342 |
| SRR2868004 | Drought Stress(Tissue:root) | 13.216 |
| SRR2967015 | Control (Tissue:root) | 24.381 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.580 |
| SRR9715740 | Leave | 6.719 |
| SRR9715741 | Leave | 10.765 |
| SRR9715739 | Root | 2.616 |
| SRR9715742 | Root | 4.428 |
| SRR9715743 | Root | 3.933 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.605 |
| SRR8749028 | MeJA induced 9h | 39.179 |
| SRR8749029 | MeJA induced 9h | 21.541 |
| SRR8749030 | Uninduced | 23.807 |
| SRR8749031 | Uninduced | 33.234 |
| SRR8749032 | Uninduced | 25.756 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.163 |
| SRR8400027 | Control-Root | 4.289 |