Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur001052s00025683.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G61150.1	homeodomain GLABROUS 1
NR	XP_007134961.1	hypothetical protein PHAVU_010G090300g [Phaseolus vulgaris]
Swissprot	tr\|Q0WV12\|ANL2_ARATH	Homeobox-leucine zipper protein ANTHOCYANINLESS 2
trEMBL	tr\|V7ANR5\|V7ANR5_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW06955.1}

Sequence

Transcript Sequence

>Glyur001052s00025683.1
AGAGTCAACCGAGTACCTTTTTTGGATGTATCTATTTGTAAGGCTTCCATGAGTCCACATGTGTTACGTTTTATCTTCACTCTCTCTCTCTCTCTCTCTGCCCCTTCACACTCCGCCCCCCCTCTCTCTCTCTCTCTTTTCTGTGTGCCAGCAAAATCTATACTATAGTCTATAGCCATTTCGTTGTCCTAAATCCCAACCCTTTTCTCTATTACTATATAATTTTTTTTTCCTTTGAAAAACTTAACAATAGTCAAGCATGCAGGAAAACGAGATACAACACTAGGGTTCCTATAATCATTTCCCATTTAACCCAAAGCCACTAAATTCAAGCCACCCCCTGAAGTGAACTCTCAAAGGGTCAGTGAGAGAGGGATAGAGAACGAAGAGCAAAGCCGTAACAATAACAAAACGGGTCTTTCAGGCTTGCCTTCTTTCTCTTTCTTTCTCTCCAAATAACAACAGAAGGAAACCAAAAAAATAAAAAATACAGACTTTTGAGAAACACATTGAGGGGCTACTTCATCCTTCATCTCTATTTTTCCCCCTTAGCCTGAAAGTTCTACTGATCTTTGCTGAGAATTCTGCGTTGGTGATTGACCCCCCAAAAATTTTCATGGATGAAGCAAATCAGTGAATAAGTGAAGTAGTAGAAGAAGGGGTTTGNGAAGTTTTGGCCTTTCTGGAGTGATTTTATTTTTATCCACAAAAGAAAAAAAGTGGCTTCTTTGATGAGTTTTGGGGGTTTTCTAGACAACAACAACTCGGGTGGTGGCGGTGCGAGAAACATAGCAGATATTCCTTACAGTAACGGCGGCAACAACAACAACGATAGAATGGCGTTTGGTGCAATCTCTCAGCCACGCCTTGTGACTACTCCCACTTTGGCCAAATCCATGTTCAACTCTCCTGGCCTCTCTCTAGCACTTCAAACCAATATAGATGGGCAAGAAGATGTGAATAGAATGGGTGAGAATTTTGAGGGGAATGGTTTGAGAAGGAGCAGGGAAGAGGAGCAAAGCANATCTGGAAGTGACAACGTGGATGGTGTTTCCGGTGATGAACAAGATGCTGCCGACAACCGTCCCAGGAAGAAGCGCTATCACCGACACACTCCTCAGCAGATACAAGAGCTTGAAGCGTTGTTTAAGGAGTGTCCTCACCCAGATGAGAAGCAAAGACTTGAACTGAGCAAAAGGCTTTGCTTGGAAACGAGGCAGGTCAAGTTTTGGTTCCAAAATCGGAGAACCCAAATGAAGACCCAATTGGAACGCCATGAGAACACGCTGCTAAGGCAAGAGAATGACAAGCTCAGAGCGGAGAACATGTCTATTAGGGACGCCATGAGGAACCCCATGTGTTCAAATTGTGGGGGTCCAGCTATCATTGGTGAGATTTCACTCGAGGAACAGCATCTTCGGATTGAGAATGCAAGGTTGAAGGATGAGCTAGACCGAGTTTGTGCACTTGCTGGCAAGTTTTTGGGGCGCCCCATTTCTTCATTGACAAGCCCAATTGCTCATCCTCCATTGCCAAACTCAAGCTTGGAGCTTGGTGTTGGTGGAAACAACAACAACAACAACAATGGCTTTGGTGGTGGTATGACTATGAGCACATTGCCTTTGGGGCCTGATTTTGGGGTGGGGATGTCTAATAACAACAACTCTTTAGCCATGGTGTCTCCTACTAGTACTAGACCAACACCTGTGGTGGTGACTAGTACTACTGGCTTTGATAGATCAGTGGAGAGGTCTATGTTTCTTGAGCTTGCCTTGGCTGCTATGGATGAGTTGGTGAAGATGGCACAGACTGGTGACCCTCTTTGGATTAGGAGTATAGAAGAAGGGGGAAGGGAAATTCTGAACCATGAGGAGTACATGAGGACATTCACTCCTTGCATTGGTTTGAGACCCAATGGTTTTGTCTCTGAGGCCTCTAGAGAGACTGGTATGGTNATCATTAACAGCTTGGCCCTTGTTGAAACTCTTATGGACGCGAATCGATGGGCAGAGATGTTTCCTTGTATCATTGCCAGAACCTCCACTACTGAAGTGATATCTAATGGAATAAACGGAACTAGAAATGGTGCACTTCAACTTATGCATGCTGAACTCCATGTTCTTTCACCTTTGGTTCCGGTTCGNGAGGTCAATTTCCTCCGCTTTTGCAAGCAGCACGCAGAAGGGGTTTGGGCTGTGGTTGATGTGTCTATAGATACCATCAGAGAAACTTCTGGCACGCCTAGTTTTATGAACTGCTGCAGGAGGCTTCCTTCTGGTTGTGTGGTGCAAGATATGCCCAATGGTTACTCCAAGGTGACATGGGTGGAACATGCAGAATATGAGGAAAGCCAAGTTCACCAGCTGTACAGATCCTTGTTGAGCTCGGGTATGGGGNTTGGTGCCCAACGCTGGGTCGCTACCTTACAACGCCAGTGCGAGTGCCTCGCCATCCTAATGTCCTCCGCACCACCCTCTCGAGACCACTCCGCAGCAATAACGGGAGGTGGAAGGAGGAGCATGCTGAAGCTGGCACAGAGGATGACGAACAACTTCTGCGCGGGGGTGTGTGCGTCGACGGTGCACAAATGGAACAAGCTGAATGCGGGGAACGTGGACGAGGACGTGAGGGTGATGACGCGGAAGAGCGTCGACGATCCCGGCGAGCCACCCGGGATCGTTCTCAGCGCCGCCACCTCCGTGTGGCTCCCCGTCTCCCCACACAGGCTCTTCGATTTCCTCCGCGACGAGAGGCTCCGTAGTGAGTGGGACATACTCTCNAACGGTGGTCCCATGCAGGAGATGGCCCACATCGCCAAGGGTCAAGACCACGGCAACTGCGTCTCCCTTCTCCGTGCTAGTGCAATCAATTCAAACCAGAGTAGCATGCTGATACTGCAGGAAACCTGCATAGACGCGGCGGGGTCGCTTGTGGTGTACGCGCCTGTTGATATCCCGGCCATNCACGTGGTCATGAACGGTGGCGATTCTGCTTACGTGGCATTGCTGCCATCGGGTTTTGCCATTGTCCCTGACGGGCCCGGGTCGCGTGGGCTGGAAAACGGAACCACCACCAACGGCAGCGATAACGGCGGGGCGCGTGTGAGCGGGTCCCTTCTAACGGTGGCGTTTCAGATCCTTGTGAATAGTCTTCCCACAGCGAAACTCACGGTGGAGTCAGTGGAGACGGTGAACAACCTCATATCCTGTACGGTTCAGAAGATCAAAGCCGCGCTTCACTGCGAAAGCTAACTGTCACGTGACCATCCCGTGACCCGCTGTTGGGGCTCTGTTAAATTATTCTTTTCTTTCTATTTTTTTTTTTTTACGTTCTCGCAAATTAACGTTGTAGTGAGTAACGGATGAAAAGCTGAAACATGTAATAGCTATAGGTTGCGCGTGGGAGTGGGTTTTGAAGATGGTGGGGGAGTGGAGGGGTGTTTGAGTCAAGAACGAACCATTCATTGGGGGAAAAAAAGCCCTTGCATGGTGCTAAGGATCTAAAACCGGGTCGGGTCATGTTCCTTAGCACAAGGCAAGGGTCGTGGTTCGGGTATTGACTCAGGTTGACCTCATGTTTGCCCCCACTAGCTGGAAAAACAAGAAAGTAATAGAGGAATTAAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01052	69480	76653	+

Gene family

Gene family	subfamily
Transcription Factors Family	HB
EAR motif-containing Proteins	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function GO:0003677 DNA binding GO:0008289 lipid binding GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001052s00025683.1	PF00046.24	Homeobox	121	176	1.50E-18
Glyur001052s00025683.1	PF01852.14	START	345	571	1.80E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.030
SRR1783600	control	0.030
SRR1783602	moderate drought stress	0.046
SRR1811619	moderate drought stress	0.052

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.150
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.177

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.585
SRR2868004	Drought Stress(Tissue:root)	1.576
SRR2967015	Control (Tissue:root)	2.612

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	23.068
SRR9715740	Leave	20.597
SRR9715741	Leave	21.203
SRR9715739	Root	0.125
SRR9715742	Root	1.137
SRR9715743	Root	1.009

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.265
SRR8749028	MeJA induced 9h	0.212
SRR8749029	MeJA induced 9h	0.251
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.003
SRR8749032	Uninduced	0.062

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.233
SRR8400027	Control-Root	1.755