Gene detail information of Glyur001053s00027286.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G53190.10Pectin lyase-like superfamily protein
NRKEH24047.10pectate lyase-like protein [Medicago truncatula]
COGYP_001628843.15.00E-25hypothetical protein Bpet0241 [Bordetella petrii DSM 12804]
Swissprottr|Q9SCP2|PLY12_ARATH0Probable pectate lyase 12 (Precursor)
trEMBLtr|A0A072U2V5|A0A072U2V5_MEDTR0Pectate lyase {ECO:0000256|RuleBase:RU361123}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold01053898113381-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyPL1


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01728pel EC:4.2.2.2 Pentose and glucuronate interconversions map00040
Quorum sensingmap02024


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001053s00027286.1PF00544.14Pec_lyase_C1523369.70E-61


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control58.089
SRR1783600control59.114
SRR1783602moderate drought stress17.179
SRR1811619moderate drought stress17.626

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain39.872
DRR006520Root Summer glycyrrhizin high producing strain40.425
DRR006521Root Winter glycyrrhizin high producing strain2.226
DRR006522Root Winter glycyrrhizin high producing strain2.536
DRR006523Root Summer glycyrrhizin low producing strain11.572
DRR006524Root Summer glycyrrhizin low producing strain12.258
DRR006525Leaf Summer glycyrrhizin high producing strain5.805
DRR006526Leaf Summer glycyrrhizin high producing strain6.571

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)20.091
SRR2868004Drought Stress(Tissue:root)7.473
SRR2967015Control (Tissue:root)10.253

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.603
SRR9715740Leave0.262
SRR9715741Leave0.256
SRR9715739Root28.289
SRR9715742Root3.346
SRR9715743Root6.387

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.631
SRR8749028MeJA induced 9h0.507
SRR8749029MeJA induced 9h1.078
SRR8749030Uninduced0.147
SRR8749031Uninduced0.000
SRR8749032Uninduced0.317

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.931
SRR8400027Control-Root24.023

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved