Gene detail information of Glyur001053s00027298.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G21540.10transducin family protein / WD-40 repeat family protein
NRXP_003521420.10PREDICTED: WD repeat-containing protein 3-like [Glycine max]
COGYP_003887875.13.00E-64WD40 repeat-containing protein [Cyanothece sp. PCC 7822]
Swissprottr|Q3Y8L7|DAW1_CHLRE2.00E-20Dynein assembly factor with WDR repeat domains 1
trEMBLtr|K7KFV5|K7KFV5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G34360.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold010537165678212+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001053s00027298.1PF00400.27WD4062920.00015
Glyur001053s00027298.1PF00400.27WD40961348.80E-07
Glyur001053s00027298.1PF00400.27WD401421769.20E-08
Glyur001053s00027298.1PF00400.27WD401822161.40E-06
Glyur001053s00027298.1PF00400.27WD404034350.00048
Glyur001053s00027298.1PF00400.27WD404795173.30E-06
Glyur001053s00027298.1PF00400.27WD405435680.13
Glyur001053s00027298.1PF00400.27WD405796113.40E-09
Glyur001053s00027298.1PF00400.27WD406166543.10E-05
Glyur001053s00027298.1PF00400.27WD406596969.90E-08
Glyur001053s00027298.1PF04003.7Utp127979009.00E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.165
SRR1783600control18.260
SRR1783602moderate drought stress16.806
SRR1811619moderate drought stress16.605

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.570
DRR006520Root Summer glycyrrhizin high producing strain16.446
DRR006521Root Winter glycyrrhizin high producing strain12.334
DRR006522Root Winter glycyrrhizin high producing strain11.917
DRR006523Root Summer glycyrrhizin low producing strain19.080
DRR006524Root Summer glycyrrhizin low producing strain18.932
DRR006525Leaf Summer glycyrrhizin high producing strain5.821
DRR006526Leaf Summer glycyrrhizin high producing strain5.773

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)20.268
SRR2868004Drought Stress(Tissue:root)14.892
SRR2967015Control (Tissue:root)14.259

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.272
SRR9715740Leave13.087
SRR9715741Leave8.964
SRR9715739Root2.019
SRR9715742Root15.951
SRR9715743Root12.616

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h32.763
SRR8749028MeJA induced 9h30.034
SRR8749029MeJA induced 9h23.447
SRR8749030Uninduced25.246
SRR8749031Uninduced31.201
SRR8749032Uninduced15.980

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root20.062
SRR8400027Control-Root15.351

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved