Gene detail information of Glyur001056s00029284.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G73760.1 | 5.00E-61 | RING/U-box superfamily protein |
| NR | KHN23749.1 | 2.53E-162 | E3 ubiquitin ligase BIG BROTHER-related [Glycine soja] |
| Swissprot | tr|O49500|MBR2_ARATH | 1.00E-31 | E3 ubiquitin-protein ligase MBR2 |
| trEMBL | tr|I1L494|I1L494_SOYBN | 2.00E-161 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G31170.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01056 | 78232 | 82159 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001056s00029284.1 | PF13639.1 | zf-RING_2 | 344 | 386 | 9.10E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 33.750 |
| SRR1783600 | control | 33.791 |
| SRR1783602 | moderate drought stress | 11.007 |
| SRR1811619 | moderate drought stress | 10.551 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.820 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.906 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.722 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.769 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.550 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.443 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.650 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.562 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 23.008 |
| SRR2868004 | Drought Stress(Tissue:root) | 17.762 |
| SRR2967015 | Control (Tissue:root) | 14.976 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 15.590 |
| SRR9715740 | Leave | 9.320 |
| SRR9715741 | Leave | 9.515 |
| SRR9715739 | Root | 1.804 |
| SRR9715742 | Root | 5.404 |
| SRR9715743 | Root | 4.850 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.939 |
| SRR8749028 | MeJA induced 9h | 2.463 |
| SRR8749029 | MeJA induced 9h | 0.568 |
| SRR8749030 | Uninduced | 0.288 |
| SRR8749031 | Uninduced | 0.053 |
| SRR8749032 | Uninduced | 0.224 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 33.909 |
| SRR8400027 | Control-Root | 37.220 |