Gene detail information of Glyur001058s00023531.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G58580.1 | 2.00E-22 | TOXICOS EN LEVADURA 63 |
| NR | KEH34336.1 | 2.07E-101 | RING-H2 finger ATL2-like protein, putative [Medicago truncatula] |
| Swissprot | tr|Q8L9T5|ATL2_ARATH | 8.00E-30 | RING-H2 finger protein ATL2 |
| trEMBL | tr|A0A072UY38|A0A072UY38_MEDTR | 8.00E-102 | RING-H2 finger ATL2-like protein, putative {ECO:0000313|EMBL:KEH34336.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01058 | 16652 | 17470 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001058s00023531.1 | PF13639.1 | zf-RING_2 | 139 | 182 | 3.60E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.725 |
| SRR1783600 | control | 0.879 |
| SRR1783602 | moderate drought stress | 0.955 |
| SRR1811619 | moderate drought stress | 0.877 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.265 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.193 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.605 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.673 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.800 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.946 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.313 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.048 |
| SRR2967015 | Control (Tissue:root) | 0.999 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.319 |
| SRR9715740 | Leave | 0.039 |
| SRR9715741 | Leave | 0.080 |
| SRR9715739 | Root | 0.501 |
| SRR9715742 | Root | 0.366 |
| SRR9715743 | Root | 0.075 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.727 |
| SRR8749028 | MeJA induced 9h | 14.400 |
| SRR8749029 | MeJA induced 9h | 10.203 |
| SRR8749030 | Uninduced | 0.155 |
| SRR8749031 | Uninduced | 0.017 |
| SRR8749032 | Uninduced | 0.325 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.575 |
| SRR8400027 | Control-Root | 1.655 |