Gene detail information of Glyur001059s00033842.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20060.3 | 5.00E-113 | alpha/beta-Hydrolases superfamily protein |
| NR | NP_001239784.1 | 5.73E-176 | uncharacterized protein LOC100796190 [Glycine max] |
| COG | YP_004468960.1 | 2.00E-30 | putative phospholipase/carboxylesterase family protein [Alteromonas sp. SN2] |
| trEMBL | tr|C6THL5|C6THL5_SOYBN | 2.00E-176 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G21090.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01059 | 25304 | 32115 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K06130 | LYPLA2 | EC:3.1.1.5 | Glycerophospholipid metabolism | map00564 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001059s00033842.1 | PF02230.11 | Abhydrolase_2 | 26 | 249 | 1.40E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.583 |
| SRR1783600 | control | 16.959 |
| SRR1783602 | moderate drought stress | 12.013 |
| SRR1811619 | moderate drought stress | 11.595 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 30.462 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 28.357 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.543 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.537 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.638 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.847 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 27.497 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 27.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 61.956 |
| SRR2868004 | Drought Stress(Tissue:root) | 46.919 |
| SRR2967015 | Control (Tissue:root) | 43.688 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 67.698 |
| SRR9715740 | Leave | 72.477 |
| SRR9715741 | Leave | 68.725 |
| SRR9715739 | Root | 26.069 |
| SRR9715742 | Root | 28.514 |
| SRR9715743 | Root | 25.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 39.954 |
| SRR8749028 | MeJA induced 9h | 39.853 |
| SRR8749029 | MeJA induced 9h | 35.755 |
| SRR8749030 | Uninduced | 34.342 |
| SRR8749031 | Uninduced | 20.534 |
| SRR8749032 | Uninduced | 23.261 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 62.718 |
| SRR8400027 | Control-Root | 53.307 |