Gene detail information of Glyur001060s00031982.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G35160.1 | 4.00E-43 | SU(VAR)3-9 homolog 5 |
| NR | KEH41340.1 | 8.49E-118 | histone-lysine N-methyltransferase, suvh protein [Medicago truncatula] |
| COG | YP_003280830.1 | 5.00E-06 | nuclear protein SET [Comamonas testosteroni CNB-2] |
| Swissprot | tr|O82175|SUVH5_ARATH | 5.00E-52 | Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 |
| trEMBL | tr|A0A072VTA4|A0A072VTA4_MEDTR | 3.00E-118 | Histone-lysine N-methyltransferase, suvh protein {ECO:0000313|EMBL:KEH41340.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01060 | 6205 | 13674 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SET |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K11420 | EHMT | EC:2.1.1.43 | Lysine degradation | map00310 |
| Longevity regulating pathway - mammal | map04211 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001060s00031982.1 | PF02182.12 | SAD_SRA | 74 | 107 | 2.50E-06 |
| Glyur001060s00031982.1 | PF02182.12 | SAD_SRA | 104 | 183 | 3.20E-10 |
| Glyur001060s00031982.1 | PF05033.11 | Pre-SET | 215 | 319 | 1.30E-14 |
| Glyur001060s00031982.1 | PF00856.23 | SET | 339 | 402 | 2.10E-14 |
| Glyur001060s00031982.1 | PF02182.12 | SAD_SRA | 568 | 712 | 2.90E-31 |
| Glyur001060s00031982.1 | PF05033.11 | Pre-SET | 739 | 815 | 4.40E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.030 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.009 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.052 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.037 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.096 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.025 |
| SRR8749030 | Uninduced | 0.029 |
| SRR8749031 | Uninduced | 0.027 |
| SRR8749032 | Uninduced | 0.022 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.000 |
| SRR8400027 | Control-Root | 0.045 |