Gene detail information of Glyur001062s00037250.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18990.1 | 6.00E-103 | AP2/B3-like transcriptional factor family protein |
| NR | XP_004498177.1 | 0 | PREDICTED: B3 domain-containing transcription factor VRN1-like [Cicer arietinum] |
| Swissprot | tr|Q8L3W1|VRN1_ARATH | 2.00E-125 | B3 domain-containing transcription factor VRN1 |
| trEMBL | tr|I1ND23|I1ND23_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G01130.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01062 | 54776 | 57618 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | B3 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001062s00037250.1 | PF02362.16 | B3 | 9 | 96 | 2.40E-15 |
| Glyur001062s00037250.1 | PF02362.16 | B3 | 299 | 389 | 1.40E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.235 |
| SRR1783600 | control | 20.755 |
| SRR1783602 | moderate drought stress | 28.256 |
| SRR1811619 | moderate drought stress | 28.784 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 32.230 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.191 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.771 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.169 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 42.489 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 42.078 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.982 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.501 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 46.751 |
| SRR2868004 | Drought Stress(Tissue:root) | 59.891 |
| SRR2967015 | Control (Tissue:root) | 56.718 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 24.687 |
| SRR9715740 | Leave | 28.962 |
| SRR9715741 | Leave | 32.062 |
| SRR9715739 | Root | 39.550 |
| SRR9715742 | Root | 52.540 |
| SRR9715743 | Root | 45.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 31.000 |
| SRR8749028 | MeJA induced 9h | 35.504 |
| SRR8749029 | MeJA induced 9h | 20.967 |
| SRR8749030 | Uninduced | 18.405 |
| SRR8749031 | Uninduced | 16.308 |
| SRR8749032 | Uninduced | 12.910 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 33.642 |
| SRR8400027 | Control-Root | 32.706 |