Gene detail information of Glyur001063s00030488.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G17920.20Cobalamin-independent synthase family protein
NRXP_004489678.10PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like isoform X1 [Cicer arietinum]
COGYP_004752198.105-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase [Collimonas fungivorans Ter331]
Swissprottr|Q42699|METE_CATRO05-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
trEMBLtr|V7C2G9|V7C2G9_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW23490.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold010635654962534+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00549metE EC:2.1.1.14 Biosynthesis of amino acids map01230
Cysteine and methionine metabolismmap00270
Selenocompound metabolismmap00450


Gene Ontology

biological_process

GO:0008652  cellular amino acid biosynthetic process

GO:0009086  methionine biosynthetic process


molecular_function

GO:0003871  5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity

GO:0008270  zinc ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001063s00030488.1PF08267.7Meth_synt_1291954.30E-71
Glyur001063s00030488.1PF01717.13Meth_synt_24157013.40E-107


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.903
SRR1783600control2.865
SRR1783602moderate drought stress2.115
SRR1811619moderate drought stress2.155

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.066
DRR006520Root Summer glycyrrhizin high producing strain11.738
DRR006521Root Winter glycyrrhizin high producing strain0.105
DRR006522Root Winter glycyrrhizin high producing strain0.136
DRR006523Root Summer glycyrrhizin low producing strain7.209
DRR006524Root Summer glycyrrhizin low producing strain6.815
DRR006525Leaf Summer glycyrrhizin high producing strain9.867
DRR006526Leaf Summer glycyrrhizin high producing strain9.679

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.360
SRR2868004Drought Stress(Tissue:root)9.399
SRR2967015Control (Tissue:root)11.082

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.115
SRR9715740Leave0.311
SRR9715741Leave1.996
SRR9715739Root1.684
SRR9715742Root16.776
SRR9715743Root13.955

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.591
SRR8749028MeJA induced 9h1.324
SRR8749029MeJA induced 9h0.319
SRR8749030Uninduced0.550
SRR8749031Uninduced0.371
SRR8749032Uninduced0.034

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root7.331
SRR8400027Control-Root9.861

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved