Gene detail information of Glyur001064s00029625.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G32980.1 | 8.00E-79 | homeobox gene 1 |
| NR | XP_003549357.1 | 0 | PREDICTED: homeobox protein ATH1-like isoform X1 [Glycine max] |
| Swissprot | tr|P48731|ATH1_ARATH | 3.00E-101 | Homeobox protein ATH1 |
| trEMBL | tr|K7MNH9|K7MNH9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G34811.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01064 | 16172 | 19480 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001064s00029625.1 | PF07526.6 | POX | 290 | 427 | 5.20E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.919 |
| SRR1783600 | control | 1.922 |
| SRR1783602 | moderate drought stress | 3.304 |
| SRR1811619 | moderate drought stress | 3.244 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.885 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.690 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.669 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.312 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.145 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.337 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.929 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.845 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.560 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.694 |
| SRR2967015 | Control (Tissue:root) | 1.233 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.128 |
| SRR9715740 | Leave | 0.032 |
| SRR9715741 | Leave | 0.233 |
| SRR9715739 | Root | 0.151 |
| SRR9715742 | Root | 0.127 |
| SRR9715743 | Root | 0.493 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.057 |
| SRR8749028 | MeJA induced 9h | 0.880 |
| SRR8749029 | MeJA induced 9h | 1.656 |
| SRR8749030 | Uninduced | 1.267 |
| SRR8749031 | Uninduced | 0.235 |
| SRR8749032 | Uninduced | 1.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.865 |
| SRR8400027 | Control-Root | 2.170 |