Gene detail information of Glyur001066s00037419.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G76890.2 | 3.00E-66 | Duplicated homeodomain-like superfamily protein |
| NR | XP_004496472.1 | 0 | PREDICTED: trihelix transcription factor GT-2-like [Cicer arietinum] |
| Swissprot | tr|Q39117|TGT2_ARATH | 1.00E-117 | Trihelix transcription factor GT-2 |
| trEMBL | tr|G7ICY9|G7ICY9_MEDTR | 0 | Myb/SANT-like DNA-binding domain protein {ECO:0000313|EMBL:AES62363.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01066 | 50378 | 53165 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Trihelix |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001066s00037419.1 | PF13837.1 | Myb_DNA-bind_4 | 389 | 476 | 1.90E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.047 |
| SRR1783600 | control | 5.931 |
| SRR1783602 | moderate drought stress | 9.987 |
| SRR1811619 | moderate drought stress | 9.654 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.177 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.037 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.492 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.190 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.925 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.238 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 71.557 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 71.182 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 51.989 |
| SRR2868004 | Drought Stress(Tissue:root) | 45.270 |
| SRR2967015 | Control (Tissue:root) | 47.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 38.401 |
| SRR9715740 | Leave | 51.081 |
| SRR9715741 | Leave | 44.978 |
| SRR9715739 | Root | 0.288 |
| SRR9715742 | Root | 3.557 |
| SRR9715743 | Root | 2.602 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.575 |
| SRR8749028 | MeJA induced 9h | 8.283 |
| SRR8749029 | MeJA induced 9h | 10.794 |
| SRR8749030 | Uninduced | 10.024 |
| SRR8749031 | Uninduced | 21.590 |
| SRR8749032 | Uninduced | 6.364 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 15.647 |
| SRR8400027 | Control-Root | 15.387 |