Gene detail

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Gene detail information of Glyur001066s00037421.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G76880.1	1.00E-49	Duplicated homeodomain-like superfamily protein
NR	XP_003592114.1	0	GT-2 factor [Medicago truncatula]
Swissprot	tr\|Q39117\|TGT2_ARATH	2.00E-146	Trihelix transcription factor GT-2
trEMBL	tr\|G7ICZ1\|G7ICZ1_MEDTR	0	Trihelix transcription factor GT-like protein {ECO:0000313\|EMBL:AES62365.1}

Sequence

Transcript Sequence

>Glyur001066s00037421.1
GAAAGAGAGAGAGCGCTTTCATATTGATACTTATATACACAAACATATACACATAAATAAAACCCCCGCATCAAAATTCAAAGAATTCACCACCCCCCCCCCCCTCTTTTTTTTTCTTCTCTGTTTATATTTTTAATTTTTCTCCTATCTCAGCTGCTGTAAGTAATTGCTGTTTCGCAAAAGAGGGGAAGAGCCAAAAGAGACTATGCTGGGGGACTCAGCTGTGCTGGGAGGAGGAGGAGGAAGTGCTGCTGCTGCTGCTTCCGGTGGTGGTGAACGTGGAGGCTCCGGCGATGCAGTGGCTGCGGCGGCATCAGCAGCAGCAGCAGCAGGAGGAGGAGCTGACGTGGCGGCGGCGGGTGGTGGTGGTGGGATTGGATCAAATTCAGGGGATGAGATTGAGAGGGGAAGTAGAATCGAAGAGGGAGAACGTAGCTTCGGTGGCAACCGGTGGCCACGACAAGAGACTTTGGCGCTGTTAAGGATACGGTCGGATATGGACGTGGCGTTTCGAGATGCAAGTGTTAAAGGTCCCTTGTGGGAAGAAGTCTCCAGGAAACTGGCAGAGCTTGGGTATCACAGGAGTGCAAAGAAGTGCAAAGAGAAATTCGAGAATGTGTACAAGTACCACAAGAGAACCAAGGAAGGTCGAGGTGGGAAATCAGATGGCAAAACTTATCGCTTCTTTGATCAATTAGAAGCCCTTGATCATCAGAATTACCAGCAGCACCACCCTCCTCCATCTCATCATCAATCCCCCAAACCCATTATTAACCCATCAAAACCACCACCACAATCAGCACCACTACCGGTAGCAGTAGCACCGTCACTAGTAGTAACAACAACANCAACAACTTCTTCTACAGCAGCACCACCAGTTTCACCACTCCCAACAACAACAGTACCAATGCCACCANTGCCCAACACCACTCTCACCAGTGTCCCCCAAATCACTGTTCCATCAACAACACCACTCTCCATGCCTCAAGGAATTGCCACAACTACCCCTTCCTACCCGCCAACGAATAACAACCCAACAAATTTCCCTCCTCCTCCTCCACCGGCAGTGTCATTCCCCAACATTCCAATGGATCTCTTATCCAATTCAAGCTCTTCCTCAACATCTTCCGAGGAAACACTCGATAGGGGCCGAAAAAGGAAGCGCAAATGGAAGGACTTCTTCGAGAGACTAATGAAGGAAGTTGTAGAGAAGCAAGAGGAGCTGCAGAAGAGGTTTCTAGAAGCCATAGAGAAACGAGAACACGACCGAATGGTTAGAGAAGAAGCATGGAGAGTACAAGAGATGCAAAGGATCAATAGAGAGAGGGAAATTCTTGCACAAGAAAGATCCATAGCTGCAGCCAAAGATGCCGCGGTAATGTCATTCTTACAAAAGATAGCCGAACAACAAAATCTCGGACAAGCATTGAGCAACATCAACATTCTACAACCACAGCAACCACCACCACCACCACAACAACAACCTCAACCACAACAAACACAACCAACACAAGCACCACCACCTCCTCCACCAGCACAAGTACAAGTACAAGCATTGCCGCCGCCGGTGCCGCAACAACAACCACCACCGGTTGTTCAGCCTGTGATGGTCCAGGCGCAAGTGACGAATAACAACATGGAAATAGTAAAGGCTGGTGGTGGTGGTAGTAACAATAACGGGGAGAATAATATNATGGGGGCGAGTTCATCGAGGTGGCCAAAAGTGGAGGTAGAGGCACTGATAAAGCTGAGGACGAGTCTTGACGCAAAGTACCAAGAGAATGGACCAAAGGGTCCTCTGTGGGAAGAGATATCAGCGTCAATGAGGAAGCTGGGTTACAACAGGAGTTCAAAGAGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAGGTTAAAGAGAGCAACAAAAAGAGACCAGAAGATTCCAAGACTTGTCCCTATTTCCACCAGCTGGATGCACTCTACAGGGAGAGGAACAAGATGGAGAATGTGGTGAAGGCGGCGGAGAGCATGGCGGCGCCGTTGATGGTGCGGCCGGAGCAGCAATGGCCACCTCAGCAGCAGCAGGATCAGAATGAGAATGAGAATGAGAATGACCCAATGATGGAAGATGATATGGATGAAGAGGAGAGAGATAACGGAGAGGAAGATGAGGATGATGAAGATGAAGGTAGTGGTAGTGGCGGTGGTGGTAATAACTATGAGATAGTGGCGGCAACTAAGCCTGAGTAGTAGCTGCAAAAGGGGGCCCCAAAAAAAGAAGATGCAGCAACAATATTCAAAATTGCGAGCTTGGGGTGGGTCAGAGATCACAGTGCAGGGGTTGTCGGAGAAGGGTGGTGGTGGTGGTGGAGACAGAGAGTGTGTGTTTTTGTGTGTGGGGAAGAATTTGAATATACACTTGCGGTGGAATGACACATAAGCATGGAGGTGGGAGAGATCTGNTGGGTTGTTAATTAGTTTTGTTGTAGCATATAGTCGGTAAGATTATATGTTTTTCAATTTTATAAAATTTGTTTATTTTTTTGGGGAATAATAATAAAATAAGTCAAATCAGAGAGGAATTTTAAGATATATATATAGAGAGAGGGGTTCTGCAGGTTCCAAAATAACGAATAAAAGGAAAGAGAGACCTTAATTAAGGTTGTATTTGATTTTTAATTTTTCTTCATCTTGTTCTTAATTATGTTCATGGTGGTGTAAATGGGAGAAGATTAATTGGGGTTTTGCTTCTTTTTCTTGTTTAGTTTTCAATTTTGACATGTTGTTGGTCTTCAAATGCAGTCATTGACTTTTTCTTTCTTGTTTTAGCTTGTATTTTTCGGTGTGAATTAATTGTCCCCGCGCGTTTCTGTTTTGCACTGACTCGATTGTTAGAATAATAGTAATAGATCGGAAAAATTATGGAGTACNTTTAACTGTGGCACTGAAAGATGGGATTCTAAACAAGGTTTGATTTTGAGAAATGTGAGGGGGGNAAACAAATTATTGGAGAAGAAAATAATATAAAAAGGGGTAGGGGGGGCTTTAAATTGTTGGGATAGTGACCCTACCCTTTTGCATTGCAACAGACGCTTCTCAAAGCAGAAAAAAACCAGCATCACACATGGAGTCATAAACCCTTGAAAAGAGGGGTCCACAGGGAGGAATCTTGTGAGTTGTGAGTAGCCTCACTCTGAAAAGAACCCAAAACACTAGCATGCAGTTGTTGTCTCTGTCACACTGTGCACACACAAGGTAATGTGTTGTGTTTCTCTTCATGGGTGTCAGTACTAAGAAAGAGATGAAGGACGTTCATCATCATCTTCAATTCAATTCAATTCTTCATCGTGCGTCTAATGTTGGGTCGACTTTTTGGGCTGTTAATGTGCTTTTTGGGCTGTTAATGTGCTTTTGTCAGGCTTTCATCAGCATCTCATACTGATTATAGTGTGTTTCTGTTAACAAAAATTAATGTTGTACAATATGTTATTATAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01066	71047	75536	-

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001066s00037421.1	PF13837.1	Myb_DNA-bind_4	81	167	3.40E-20
Glyur001066s00037421.1	PF13837.1	Myb_DNA-bind_4	502	589	6.50E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.220
SRR1783600	control	19.091
SRR1783602	moderate drought stress	50.491
SRR1811619	moderate drought stress	50.441

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	35.038
DRR006520	Root Summer glycyrrhizin high producing strain	35.225
DRR006521	Root Winter glycyrrhizin high producing strain	17.892
DRR006522	Root Winter glycyrrhizin high producing strain	17.468
DRR006523	Root Summer glycyrrhizin low producing strain	44.108
DRR006524	Root Summer glycyrrhizin low producing strain	43.806
DRR006525	Leaf Summer glycyrrhizin high producing strain	54.535
DRR006526	Leaf Summer glycyrrhizin high producing strain	54.047

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	56.972
SRR2868004	Drought Stress(Tissue:root)	47.809
SRR2967015	Control (Tissue:root)	63.460

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	52.578
SRR9715740	Leave	57.358
SRR9715741	Leave	53.843
SRR9715739	Root	1.877
SRR9715742	Root	19.694
SRR9715743	Root	16.141

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.025
SRR8749028	MeJA induced 9h	22.044
SRR8749029	MeJA induced 9h	27.125
SRR8749030	Uninduced	51.211
SRR8749031	Uninduced	34.959
SRR8749032	Uninduced	26.929

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	18.902
SRR8400027	Control-Root	21.684