Gene detail information of Glyur001067s00029141.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G35330.2 | 0 | RING/U-box superfamily protein |
| NR | KHN45974.1 | 0 | MND1-interacting protein 1 [Glycine soja] |
| Swissprot | tr|Q8RX22|MIP1_ARATH | 0 | MND1-interacting protein 1 |
| trEMBL | tr|K7KPL9|K7KPL9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G23770.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01067 | 20969 | 25029 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001067s00029141.1 | PF13920.1 | zf-C3HC4_3 | 695 | 743 | 7.40E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 26.636 |
| SRR1783600 | control | 26.683 |
| SRR1783602 | moderate drought stress | 25.985 |
| SRR1811619 | moderate drought stress | 26.057 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 27.323 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 27.162 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.314 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 27.725 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.414 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.474 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.859 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.750 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 35.262 |
| SRR2868004 | Drought Stress(Tissue:root) | 43.944 |
| SRR2967015 | Control (Tissue:root) | 41.957 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 18.605 |
| SRR9715740 | Leave | 17.643 |
| SRR9715741 | Leave | 21.084 |
| SRR9715739 | Root | 6.108 |
| SRR9715742 | Root | 31.285 |
| SRR9715743 | Root | 25.893 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.833 |
| SRR8749028 | MeJA induced 9h | 38.137 |
| SRR8749029 | MeJA induced 9h | 30.997 |
| SRR8749030 | Uninduced | 30.648 |
| SRR8749031 | Uninduced | 51.297 |
| SRR8749032 | Uninduced | 33.585 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 30.300 |
| SRR8400027 | Control-Root | 29.542 |