Gene detail information of Glyur001069s00022464.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G39280.24.00E-77phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative
NRXP_004507443.11.71E-112PREDICTED: probable phenylalanine--tRNA ligase alpha subunit-like [Cicer arietinum]
COGYP_006923659.14.00E-15phenylalanyl-tRNA synthetase subunit alpha [Methanolobus psychrophilus R15]
Swissprottr|Q9T034|SYFA_ARATH1.00E-92Probable phenylalanine--tRNA ligase alpha subunit
trEMBLtr|C6TG24|C6TG24_SOYBN2.00E-111Putative uncharacterized protein {ECO:0000313|EMBL:ACU20776.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold010691803720912-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01889FARSA, pheS EC:6.1.1.20 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0043039  tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000049  tRNA binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001069s00022464.1PF01409.15tRNA-synt_2d1942322.40E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.983
SRR1783600control0.940
SRR1783602moderate drought stress0.961
SRR1811619moderate drought stress0.941

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.305
DRR006520Root Summer glycyrrhizin high producing strain0.000
DRR006521Root Winter glycyrrhizin high producing strain0.322
DRR006522Root Winter glycyrrhizin high producing strain0.306
DRR006523Root Summer glycyrrhizin low producing strain3.176
DRR006524Root Summer glycyrrhizin low producing strain2.655
DRR006525Leaf Summer glycyrrhizin high producing strain0.261
DRR006526Leaf Summer glycyrrhizin high producing strain0.000

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.130
SRR2868004Drought Stress(Tissue:root)0.030
SRR2967015Control (Tissue:root)0.000

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.519
SRR9715740Leave0.256
SRR9715741Leave0.487
SRR9715739Root0.000
SRR9715742Root0.000
SRR9715743Root0.000

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.167
SRR8749028MeJA induced 9h14.739
SRR8749029MeJA induced 9h14.337
SRR8749030Uninduced2.037
SRR8749031Uninduced4.005
SRR8749032Uninduced5.111

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.169
SRR8400027Control-Root0.092

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved