Gene detail information of Glyur001069s00022467.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G39280.17.00E-165phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative
NRKHN25375.10Putative phenylalanine--tRNA ligase alpha subunit [Glycine soja]
COGYP_687290.17.00E-67phenylalanyl-tRNA synthetase subunit alpha [Methanocella arvoryzae MRE50]
Swissprottr|Q9T034|SYFA_ARATH0Probable phenylalanine--tRNA ligase alpha subunit
trEMBLtr|G7JG63|G7JG63_MEDTR0Phenylalanyl-tRNA synthetase alpha chain, putative {ECO:0000313|EMBL:AES89103.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold010693220739033+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01889FARSA, pheS EC:6.1.1.20 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0043039  tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000049  tRNA binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001069s00022467.1PF01409.15tRNA-synt_2d3645501.60E-61


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.429
SRR1783600control12.193
SRR1783602moderate drought stress15.871
SRR1811619moderate drought stress15.121

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.139
DRR006520Root Summer glycyrrhizin high producing strain14.935
DRR006521Root Winter glycyrrhizin high producing strain14.756
DRR006522Root Winter glycyrrhizin high producing strain14.330
DRR006523Root Summer glycyrrhizin low producing strain15.927
DRR006524Root Summer glycyrrhizin low producing strain15.998
DRR006525Leaf Summer glycyrrhizin high producing strain8.098
DRR006526Leaf Summer glycyrrhizin high producing strain8.276

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.211
SRR2868004Drought Stress(Tissue:root)17.701
SRR2967015Control (Tissue:root)17.227

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.882
SRR9715740Leave8.912
SRR9715741Leave10.269
SRR9715739Root2.727
SRR9715742Root10.935
SRR9715743Root9.212

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.078
SRR8749028MeJA induced 9h12.954
SRR8749029MeJA induced 9h11.985
SRR8749030Uninduced9.756
SRR8749031Uninduced9.595
SRR8749032Uninduced10.043

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root28.400
SRR8400027Control-Root30.119

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved