Gene detail

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Gene detail information of Glyur001069s00022476.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G19440.1	0	3-ketoacyl-CoA synthase 4
NR	XP_004507452.1	0	PREDICTED: 3-ketoacyl-CoA synthase 4-like [Cicer arietinum]
COG	NP_285649.1	3.00E-13	chalcone synthase [Deinococcus radiodurans R1]
Swissprot	tr\|Q9LN49\|KCS4_ARATH	0	3-ketoacyl-CoA synthase 4
trEMBL	tr\|F6HQM8\|F6HQM8_VITVI	0	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}

Sequence

Transcript Sequence

>Glyur001069s00022476.1
CTGCAGCCTTTTGCACAAAATGAAACGTGGTAGGAAAACCAAGTGCAGAAGACAAACACAACACAACCCACCCAAACAAACACAGCTCAGCCCCTGGTGTCAGTTACAAAGTCAAGACGCTGCCTTCCGCGCTTCCTTGACCACCTCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCACATCCCAAACACACCCCTTTGTAAGTTGGCCCAAAATTTCCCCCTTTCCTATTCAAAGTTCGTGTGCCTTTGATTCCCAAACGGTTCGCCTCTGTACGACGCATGCAGAGGCAACAACAACCGAGAGAGAAAGAAAGAGAGAGAGCGTGCGGGTGTGTTTGTGTTGTGTGAGAGTCTGTGGCACACACACAGTCATTCATCATAGCTAAGGTTTGAGAGGGTTGTTGCAGGCCAGTTAACAAAACAGCACCTTTTCCAACGTACTACACCCCTTTCTCCTCTTCCCTCCCCTGACTCTCGGACGCATTCATTGTACTACGTGGTCCATTCCCTATGCTCTACGGGTGGTTGTTGTAACTAGTTGTATCAAATCAAATATCAAATCTAATCAAAACCCTTTTCCCTTCACCCAACCCCAATTCCTTCCCACAATCCAAAATCCAATTTTTTCCCCCTCCCCTTCACTCAGANCCATCATACCCATATATAAACACACAGAGAAACAGAGACGCATAGCAATCGAGCTAATTAATTTGCGAATCTAAAACCCCCAAAAAAAATGAGTTCTTTGGAGTCTTCTCAGATCCACCAGAGTCGGAGGCTACCAGATTTTCTTCAGAGTGTGAATCTGAAGTACGTGAAACTGGGTTACCATTATCTCATCACTCACCTTTGGGCACTCTGTCTCATCCCTCTGATGGCCGTAATCATTGTTCAAGCAGCACAGATGAACCCTGAGGATCTCCACCATCTCTGGCTCCACCTCAAGTACAACCTCGTCAGCGTCGTCATCTGCTGCGCCTTCCTCGTATTCGGATCCACCGTATACATCATGACCCGACCCAGATCCGTTTACCTCATCGACTTCTCCTGCTACCGTCCCCCTTCCCACCTCAGCGTCAAATTCGACCAGTTCATGGAACACTCCACCCTCACCGGCGACTTCGACGATTCCTCCCTCGAGTTCCAGAAGAAGATTCTGGAACGCTCCGGCCTCGGCGAAGAGACCTATGTCCCCGAAGCCATGCACCACATTCCTCCCACCCCTTCCATGGCTGCCGCCAGAGAAGAGGCAGAGCAGGTTATGTTTGGTGCCTTGGATAACCTCTTTGCCAATGCGAGGATCAAGCCTAAGGACATTGGTATCCTTGTTGTGAATTGCAGCCTTTTCAACCCTACCCCTTCACTCTCAGCTATGATTGTTAACAAGTACAAGCTGAGGGGTAACATAAGGAGCTTCAACTTAGGGGGTATGGGTTGTAGCGCTGGTGTTATAGCCATTGATCTTGCTAAGGACATGCTTCAGGTTCATAGGAACACTTATGCTGTGGTTGTTAGCACTGAGAATATTACTCAGAATTGGTACTTTGGGAACAAGAAGTCCATGTTGATACCCAATTGCTTGTTCCGCGTTGGCGGTGCTGCGGTTTTGCTATCCAACAAGGGTTCTGATAGGAGAAGGGCAAAGTATAAGCTTGTTCATGTTGTGAGGACTCATAAAGGTTCAGATGATAAGGCTTTCAGGTGTGTTTACCAGGAGCAGGACGATGCTGGGAAAACCGGTGTGTCGCTTTCGAAGGATCTCATGGCTATTGCTGGTGGAGCTCTCAAGACTAACATCACTACTTTGGGTCCACTTGTGCTTCCAGTGAGTGAACAGCTTCTGTTCTTTGCTACCTTGGTGGTTAAGAAGCTGTTCAATGCCAAGGCCAAGCCTTACATACCTGATTTCAAGCTTGCATTTGAGCATTTCTGCATTCATGCCGGTGGAAGGGCAGTGATTGATGAGCTTGAGAAGAATCTGCAGCTTCTGCCTGTTCATGTTGAGGCATCCAGAATGGCACTTCACAGGTTTGGGAACACTTCCTCCAGTTCAATTTGGTATGAGTTGGCTTACATTGAGGCCAAGGGAAGGATGAGGAAAGGGAACCGTGTGTGGCAGATTGCATTTGGGAGTGGGTTTAAGTGTAACAGTGCTGTGTGGCAGGCATTGAGACATGTAAAGCCCTCACCAAATAGTCCATGGGAAGATTGCATTGATAGGTACCCAGTTCAGATTGTTATATAGTTGATAGAATAGTTCAGTTCTATTGTTATGATCGAGTTAATTAGAGGGTCATTTTATCTTCCATTTATTTCTAAATTTATTGGCTCAGGGTCAGGGATGTCTGCTTTAGAAGTCATCACAGTCACTTAATCCATATTGGGTTGCTTGAGTACTTGTTGTTATTAAGCCATTGTCCTGGGTAATTATTATGCAATTGCAGAGTAATGTTTATATGATTAAGTGAGTATTCCTTCATTCAAACTACTATATATTATGCATAGAACTATAGAAGCAGCACCGCATCTAATCTAATTGATTAAAAAAATAAAGCAAAGCACAGCCTTGTTAGAACTTCAATGCATAAAGCTGCAAATTGTGCGGATAAGAAAAGGTCTAGATGAATAGTACTACTGCCAATTCATTGAGGCATCAGTATCTTTTTTTTTTCTCTTTCCAATTAAGCGTATGGAAAAGCAATAAGCATCGTATTCTCTGATGTACATTTTAGATACTGTATGAAAAAAATCACATGGCCAGCCTTTGCAAGCAGCCTTTTTTATTTTATAAAAGAAAAGTGTTATTCTTTTCTTCTTTTCCTCTGCAGCGCTTTGTGCGTTCTACCACACGAAGTGTTTGTTTGCTTTTAGCCTTAGGCCATACCAAAAGGGGGGTTGTCTCGTTACTTTGTCCTTTCTGCATACATTCGTTGGTCTAAGCTAGAGTAGTTTATATTTGGTCAAATCCAAGATA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01069	77375	80494	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15397	KCS	EC:2.3.1.199	Fatty acid elongation	map00062

Gene Ontology

biological_process

GO:0006633 fatty acid biosynthetic process

GO:0008152 metabolic process

GO:0008610 lipid biosynthetic process

cellular_component GO:0016020 membrane molecular_function GO:0003824 catalytic activity GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001069s00022476.1	PF08392.7	FAE1_CUT1_RppA	90	379	2.00E-148
Glyur001069s00022476.1	PF08541.5	ACP_syn_III_C	396	476	2.80E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.250
SRR1783600	control	21.242
SRR1783602	moderate drought stress	18.815
SRR1811619	moderate drought stress	18.840

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.359
DRR006520	Root Summer glycyrrhizin high producing strain	25.325
DRR006521	Root Winter glycyrrhizin high producing strain	22.583
DRR006522	Root Winter glycyrrhizin high producing strain	21.971
DRR006523	Root Summer glycyrrhizin low producing strain	47.473
DRR006524	Root Summer glycyrrhizin low producing strain	46.991
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.396
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.172

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	37.696
SRR2868004	Drought Stress(Tissue:root)	42.947
SRR2967015	Control (Tissue:root)	39.765

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	41.922
SRR9715740	Leave	41.701
SRR9715741	Leave	42.531
SRR9715739	Root	198.557
SRR9715742	Root	123.037
SRR9715743	Root	133.348

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	73.675
SRR8749028	MeJA induced 9h	162.977
SRR8749029	MeJA induced 9h	146.508
SRR8749030	Uninduced	119.311
SRR8749031	Uninduced	196.089
SRR8749032	Uninduced	117.735

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	22.828
SRR8400027	Control-Root	26.907