Gene detail information of Glyur001069s00022477.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G39250.1 | 6.00E-19 | RAD-like 1 |
| NR | XP_003540679.1 | 1.18E-35 | PREDICTED: protein RADIALIS-like 1-like [Glycine max] |
| Swissprot | tr|F4JVB8|RADL1_ARATH | 4.00E-24 | Protein RADIALIS-like 1 |
| trEMBL | tr|K7LSY9|K7LSY9_SOYBN | 4.00E-36 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G04680.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01069 | 86048 | 86329 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB-related |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001069s00022477.1 | PF00249.26 | Myb_DNA-binding | 16 | 59 | 4.00E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.561 |
| SRR1783600 | control | 1.857 |
| SRR1783602 | moderate drought stress | 2.666 |
| SRR1811619 | moderate drought stress | 2.250 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.537 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.441 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.929 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.613 |
| SRR2967015 | Control (Tissue:root) | 1.180 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.354 |
| SRR9715739 | Root | 3.869 |
| SRR9715742 | Root | 1.483 |
| SRR9715743 | Root | 1.107 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.080 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.956 |
| SRR8400027 | Control-Root | 6.127 |