Gene detail information of Glyur001070s00024972.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G77250.11.00E-90RING/FYVE/PHD-type zinc finger family protein
NRXP_006596245.10PREDICTED: uncharacterized protein LOC100810450 isoform X1 [Glycine max]
Swissprottr|Q9SGH2|MBD9_ARATH2.00E-13Methyl-CpG-binding domain-containing protein 9
trEMBLtr|K7M722|K7M722_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G24986.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold010701597122297+


Gene family

Gene familysubfamily
Transcription Factors FamilyPHD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001070s00024972.2PF00628.24PHD3564027.70E-08
Glyur001070s00024972.2PF00628.24PHD5155614.10E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.556
SRR1783600control8.525
SRR1783602moderate drought stress9.198
SRR1811619moderate drought stress9.287

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.182
DRR006520Root Summer glycyrrhizin high producing strain11.868
DRR006521Root Winter glycyrrhizin high producing strain22.260
DRR006522Root Winter glycyrrhizin high producing strain22.009
DRR006523Root Summer glycyrrhizin low producing strain9.921
DRR006524Root Summer glycyrrhizin low producing strain9.960
DRR006525Leaf Summer glycyrrhizin high producing strain6.860
DRR006526Leaf Summer glycyrrhizin high producing strain7.010

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.423
SRR2868004Drought Stress(Tissue:root)18.792
SRR2967015Control (Tissue:root)23.976

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.065
SRR9715740Leave20.041
SRR9715741Leave14.105
SRR9715739Root1.495
SRR9715742Root6.509
SRR9715743Root5.766

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.088
SRR8749028MeJA induced 9h16.915
SRR8749029MeJA induced 9h9.460
SRR8749030Uninduced11.210
SRR8749031Uninduced7.336
SRR8749032Uninduced6.733

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root21.692
SRR8400027Control-Root18.206

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved