Gene detail information of Glyur001071s00028836.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G05730.10anthranilate synthase alpha subunit 1
NRXP_004500675.10PREDICTED: anthranilate synthase component I-1, chloroplastic-like [Cicer arietinum]
COGYP_005444340.12.00E-145anthranilate synthase component I [Phycisphaera mikurensis NBRC 102666]
Swissprottr|P32068|TRPE_ARATH0Anthranilate synthase alpha subunit 1, chloroplastic (Precursor)
trEMBLtr|G7JB70|G7JB70_MEDTR0Anthranilate synthase alpha 1 {ECO:0000313|EMBL:AES71122.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold010711902924919+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01657trpE EC:4.1.3.27 Biosynthesis of amino acids map01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400
Quorum sensingmap02024
Biofilm formation - Pseudomonas aeruginosamap02025


Gene Ontology

biological_process

GO:0000162  tryptophan biosynthetic process

GO:0009058  biosynthetic process


molecular_function

GO:0004049  anthranilate synthase activity

GO:0016833  oxo-acid-lyase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001071s00028836.1PF04715.8Anth_synt_I_N1543089.60E-30
Glyur001071s00028836.1PF00425.13Chorismate_bind3696407.50E-86


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.296
SRR1783600control1.247
SRR1783602moderate drought stress0.371
SRR1811619moderate drought stress0.357

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.741
DRR006520Root Summer glycyrrhizin high producing strain0.688
DRR006521Root Winter glycyrrhizin high producing strain0.051
DRR006522Root Winter glycyrrhizin high producing strain0.109
DRR006523Root Summer glycyrrhizin low producing strain0.222
DRR006524Root Summer glycyrrhizin low producing strain0.149
DRR006525Leaf Summer glycyrrhizin high producing strain1.870
DRR006526Leaf Summer glycyrrhizin high producing strain1.882

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)3.065
SRR2868004Drought Stress(Tissue:root)1.364
SRR2967015Control (Tissue:root)1.874

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.568
SRR9715740Leave0.008
SRR9715741Leave0.373
SRR9715739Root0.877
SRR9715742Root1.536
SRR9715743Root1.197

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.005
SRR8749028MeJA induced 9h1.289
SRR8749029MeJA induced 9h1.522
SRR8749030Uninduced0.107
SRR8749031Uninduced0.118
SRR8749032Uninduced0.547

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root4.312
SRR8400027Control-Root3.966

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved