Gene detail information of Glyur001072s00031303.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G49980.1 | 0 | auxin F-box protein 5 |
| NR | XP_004490408.1 | 0 | PREDICTED: transport inhibitor response 1-like protein-like [Cicer arietinum] |
| Swissprot | tr|Q9LTX2|TIR1L_ARATH | 0 | Transport inhibitor response 1-like protein |
| trEMBL | tr|G7KBF5|G7KBF5_MEDTR | 0 | Transport inhibitor response protein, putative {ECO:0000313|EMBL:AES98190.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01072 | 38225 | 41556 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 40.604 |
| SRR1783600 | control | 40.886 |
| SRR1783602 | moderate drought stress | 46.989 |
| SRR1811619 | moderate drought stress | 46.916 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 39.366 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 39.001 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.537 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.940 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 35.416 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 35.774 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.364 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.360 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 42.624 |
| SRR2868004 | Drought Stress(Tissue:root) | 46.463 |
| SRR2967015 | Control (Tissue:root) | 55.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 14.307 |
| SRR9715740 | Leave | 22.199 |
| SRR9715741 | Leave | 16.175 |
| SRR9715739 | Root | 48.887 |
| SRR9715742 | Root | 48.953 |
| SRR9715743 | Root | 50.158 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.058 |
| SRR8749028 | MeJA induced 9h | 9.238 |
| SRR8749029 | MeJA induced 9h | 5.322 |
| SRR8749030 | Uninduced | 5.143 |
| SRR8749031 | Uninduced | 2.437 |
| SRR8749032 | Uninduced | 2.193 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 50.205 |
| SRR8400027 | Control-Root | 54.239 |