Gene detail information of Glyur001075s00028486.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G19490.1 | 7.00E-51 | Histone superfamily protein |
| NR | XP_003518474.1 | 1.20E-141 | PREDICTED: dr1-associated corepressor-like [Glycine max] |
| Swissprot | tr|Q9ZVL3|NFYC3_ARATH | 3.00E-11 | Nuclear transcription factor Y subunit C-3 |
| trEMBL | tr|K7KB58|K7KB58_SOYBN | 4.00E-142 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G44500.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01075 | 44467 | 47830 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-YC |
| EAR motif-containing Proteins | NF-YC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001075s00028486.1 | PF00808.18 | CBFD_NFYB_HMF | 8 | 71 | 3.70E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.133 |
| SRR1783600 | control | 2.432 |
| SRR1783602 | moderate drought stress | 3.107 |
| SRR1811619 | moderate drought stress | 2.741 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.730 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.526 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.522 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.402 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.110 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.044 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.870 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.518 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.239 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.304 |
| SRR2967015 | Control (Tissue:root) | 5.054 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 46.312 |
| SRR9715740 | Leave | 52.461 |
| SRR9715741 | Leave | 52.761 |
| SRR9715739 | Root | 19.759 |
| SRR9715742 | Root | 22.328 |
| SRR9715743 | Root | 22.901 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.930 |
| SRR8749028 | MeJA induced 9h | 11.318 |
| SRR8749029 | MeJA induced 9h | 29.220 |
| SRR8749030 | Uninduced | 16.567 |
| SRR8749031 | Uninduced | 42.872 |
| SRR8749032 | Uninduced | 46.087 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.069 |
| SRR8400027 | Control-Root | 24.411 |