Gene detail information of Glyur001076s00035977.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G30860.11.00E-148SET domain group 4
NRXP_006582099.10PREDICTED: histone-lysine N-methyltransferase ASHR3-like isoform X3 [Glycine max]
COGYP_003280830.12.00E-21nuclear protein SET [Comamonas testosteroni CNB-2]
Swissprottr|Q949T8|ASHR3_ARATH0Histone-lysine N-methyltransferase ASHR3
trEMBLtr|K7KWM0|K7KWM0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G29960.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold010764761355069+


Gene family

Gene familysubfamily
Transcription Factors FamilySET


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11423SETD2, SET2 EC:2.1.1.43 Lysine degradation map00310


Gene Ontology

cellular_component

GO:0005634  nucleus


molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0018024  histone-lysine N-methyltransferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001076s00035977.1PF00856.23SET3164211.40E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.795
SRR1783600control0.825
SRR1783602moderate drought stress0.475
SRR1811619moderate drought stress0.549

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.338
DRR006520Root Summer glycyrrhizin high producing strain1.413
DRR006521Root Winter glycyrrhizin high producing strain2.625
DRR006522Root Winter glycyrrhizin high producing strain2.751
DRR006523Root Summer glycyrrhizin low producing strain1.660
DRR006524Root Summer glycyrrhizin low producing strain1.728
DRR006525Leaf Summer glycyrrhizin high producing strain0.349
DRR006526Leaf Summer glycyrrhizin high producing strain0.406

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)7.823
SRR2868004Drought Stress(Tissue:root)3.653
SRR2967015Control (Tissue:root)4.383

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.072
SRR9715740Leave0.215
SRR9715741Leave0.243
SRR9715739Root0.372
SRR9715742Root0.408
SRR9715743Root0.302

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h18.816
SRR8749028MeJA induced 9h19.227
SRR8749029MeJA induced 9h17.132
SRR8749030Uninduced10.584
SRR8749031Uninduced11.329
SRR8749032Uninduced9.711

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.746
SRR8400027Control-Root3.955

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved