Gene detail information of Glyur001077s00026248.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G02830.1 | 1.00E-36 | zinc finger protein 1 |
| NR | XP_007139732.1 | 5.24E-54 | hypothetical protein PHAVU_008G054800g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SWF9|ZFNL_PEA | 6.00E-50 | Zinc finger CCCH domain-containing protein ZFN-like |
| trEMBL | tr|K7LFY7|K7LFY7_SOYBN | 2.00E-56 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G38650.5} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01077 | 72200 | 81034 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001077s00026248.1 | PF00642.19 | zf-CCCH | 39 | 65 | 5.60E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 30.507 |
| SRR1783600 | control | 30.606 |
| SRR1783602 | moderate drought stress | 49.109 |
| SRR1811619 | moderate drought stress | 49.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 45.519 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 45.050 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.137 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.392 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 81.400 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 80.852 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 25.410 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 30.738 |
| SRR2868004 | Drought Stress(Tissue:root) | 41.302 |
| SRR2967015 | Control (Tissue:root) | 37.268 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 32.146 |
| SRR9715740 | Leave | 39.685 |
| SRR9715741 | Leave | 36.656 |
| SRR9715739 | Root | 39.894 |
| SRR9715742 | Root | 39.264 |
| SRR9715743 | Root | 39.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.748 |
| SRR8749028 | MeJA induced 9h | 33.823 |
| SRR8749029 | MeJA induced 9h | 27.985 |
| SRR8749030 | Uninduced | 23.193 |
| SRR8749031 | Uninduced | 12.733 |
| SRR8749032 | Uninduced | 20.219 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 37.931 |
| SRR8400027 | Control-Root | 37.181 |