Gene detail information of Glyur001081s00024616.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G25400.1 | 1.00E-39 | |
| NR | NP_001238703.1 | 1.39E-67 | uncharacterized protein LOC100306684 [Glycine max] |
| COG | YP_160553.1 | 2.00E-28 | hypothetical protein ebA6173 [Aromatoleum aromaticum EbN1] |
| trEMBL | tr|C6T0F8|C6T0F8_SOYBN | 5.00E-68 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G09450.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01081 | 715 | 2448 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K16904 | DCTPP1 | EC:3.6.1.12 | Pyrimidine metabolism | map00240 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001081s00024616.1 | PF03819.12 | MazG | 33 | 101 | 3.60E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.051 |
| SRR1783600 | control | 0.051 |
| SRR1783602 | moderate drought stress | 0.261 |
| SRR1811619 | moderate drought stress | 0.266 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.334 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.166 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.460 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.590 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.890 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.195 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.534 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.445 |
| SRR2967015 | Control (Tissue:root) | 0.901 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 33.468 |
| SRR9715740 | Leave | 39.457 |
| SRR9715741 | Leave | 43.545 |
| SRR9715739 | Root | 0.281 |
| SRR9715742 | Root | 4.073 |
| SRR9715743 | Root | 1.588 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.273 |
| SRR8400027 | Control-Root | 0.671 |