Gene detail information of Glyur001081s00024627.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G75660.1 | 3.00E-07 | 5'-3' exoribonuclease 3 |
| NR | XP_011045114.1 | 5.01E-07 | PREDICTED: LOW QUALITY PROTEIN: 5'-3' exoribonuclease 3 [Populus euphratica] |
| Swissprot | tr|Q9FQ03|XRN3_ARATH | 5.00E-08 | 5'-3' exoribonuclease 3 |
| trEMBL | tr|A0A068UGS5|A0A068UGS5_COFCA | 3.00E-07 | Coffea canephora DH200=94 genomic scaffold, scaffold_26 {ECO:0000313|EMBL:CDP07414.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01081 | 56550 | 58515 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K12619 | XRN2, RAT1 | EC:3.1.13.- | Ribosome biogenesis in eukaryotes | map03008 |
| RNA degradation | map03018 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001081s00024627.1 | PF03159.13 | XRN_N | 32 | 86 | 1.10E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.789 |
| SRR1783600 | control | 0.900 |
| SRR1783602 | moderate drought stress | 0.598 |
| SRR1811619 | moderate drought stress | 0.747 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.099 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.084 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.042 |
| SRR9715740 | Leave | 0.027 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.104 |
| SRR8400027 | Control-Root | 0.214 |