Gene detail

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Gene detail information of Glyur001082s00037371.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45550.1	1.00E-116	cytochrome P450, family 76, subfamily C, polypeptide 4
NR	XP_003521519.1	0	PREDICTED: geraniol 8-hydroxylase-like [Glycine max]
COG	YP_004643624.1	7.00E-39	cytochrome P450 hydroxylase [Paenibacillus mucilaginosus KNP414]
Swissprot	tr\|Q8VWZ7\|C76B6_CATRO	4.00E-177	Geraniol 8-hydroxylase
trEMBL	tr\|I1JKJ6\|I1JKJ6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G02410.1}

Sequence

Transcript Sequence

>Glyur001082s00037371.1
ATGGAGCACATTGATGCACTTCTTGTGGTAATTTCTTTAGTAGTTTGGGTAAGCATGCACATCCTCATCTCCAGCATAGGGATCAAAACCAAAACAGCCAATAAATCCTCCAAATACCCACCAGGACCTCANCCTTTTCCCATTATAGGAAACATCTTGGAACTTGGCAGCCAGCCTCACAAGGCACTTACCAAGCTATCAAAANCTTATGGACCCCTTATGAGTTTGAAACTTGGTTACACTTACTCAACCACCATAGTCATTTCCTCCCCACAAGTTGCCAAAGAAGTACTCCACAAAAATGAACAAATCTTCTCTAACAGGGCCATCCCTGACACCCTTAAGGCACTTGACCATCACATATTTTCAATGGCATGGATGCCACCTTTAGATAAACATTGGAGGACCCTTAGGAAAGTTAGTGCTACNAAAGTGTTCTCTTCTCAAAAGCTTGACTCCACACAGTTTCTTCGTCAAAGGAAGATGCAAGAATTGCTATGTCATGTCAAGGAAGTGTGCAAGAAAGGAGAAGCCTTGGATATAGGTGAGGCTACCTTTGTAACNGTGCTTAATTCCTTATCAAACACTTTCTTCTCTATAGATTTGGCTCATTACAATTCTGAGGCGGGTAAGTCTAAGGAATTCAAGGAAATTGTTTGGGGCATCATGGAAGAAGCTGGAAGGCCCAATGTTGTGGACTTCTTCCCAGTGTTTCGAATGCTTGATCCCCAACGGGCGCGCGCGAGAATGAGAAGCTATTTTGAGAAGCTGATTTCGTGGTTTGATGGTCTTATAGAAGAAAGGTTGAACTTGAGAGGTTTGGAANGTGAGCCCAAGGCATTCCATGACGTGTTAGATTCTGTGCTGGAACTCATGCTAGAAGACAATTTGCAACTGAGCCGCCAGCATATTCTGCATTTATTTTTGGATTTATTTGTGGCTGGATTAGACACAACATCAAGTTCAGTAGAATGGGCAATGACTGAGTTGCTACGTAGCCCAGCAAAAATAGTTAAAGTGAGAGAAGAGCTTGAACGGGTTCTTNGCAAAGGCGAACAGCAACTTGAAGAATCACACATCTCAAAGCTTCCTTTCCTACGAGCAGTGGTAAAAGAAACTCTTCGCTTGCATCCACCCGTCCCATTGTTAGTGCCACGCAAGTCAGAAATTGATGATGTTGAGATTTGTGGCTTCACAGTGCCTAAAAATGCACAAATTCTGGTCAATGTGTGGGGCATGGGGAGAGATTCAAGTATTTGGGAAAACCCAAATGAGTTTATGCCTGAGAGATTCTTGGATAGTGAGATTGATTTTAAAGGCCGAGACTTTGAGTTGATTCCATTTGGAGCTGGAAGAAGGATTTGCCCTGGGTTGCCGTTGGCTCATAGGACTGTGCACATTGTGTTGGCCTCTCTTCTGCGTGACNATCATTGGAAGCTCGTGGATGGACAAAAGCCTAAAGACATTGATATGTCTGAGAAATATGGGTTTACTTTGCATAAGGCCCAACCTCTCAAAGTCGTTCCCATCCAAGCATAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01082	14958	17753	-

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP76C4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function GO:0005506 iron ion binding GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001082s00037371.1	PF00067.17	p450	40	501	5.50E-101

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.327
SRR1783600	control	4.213
SRR1783602	moderate drought stress	5.555
SRR1811619	moderate drought stress	5.275

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.070
DRR006520	Root Summer glycyrrhizin high producing strain	0.023
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.287
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.360

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	35.864
SRR2868004	Drought Stress(Tissue:root)	45.880
SRR2967015	Control (Tissue:root)	36.637

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	5.899
SRR9715740	Leave	3.997
SRR9715741	Leave	13.187
SRR9715739	Root	4.503
SRR9715742	Root	7.356
SRR9715743	Root	5.250

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	33.697
SRR8749028	MeJA induced 9h	193.936
SRR8749029	MeJA induced 9h	29.754
SRR8749030	Uninduced	552.371
SRR8749031	Uninduced	376.579
SRR8749032	Uninduced	200.229

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	47.223
SRR8400027	Control-Root	33.480