Gene detail information of Glyur001083s00026394.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G12710.1 | 3.00E-103 | DNA glycosylase superfamily protein |
| NR | XP_007149154.1 | 0 | hypothetical protein PHAVU_005G045900g [Phaseolus vulgaris] |
| COG | YP_005441838.1 | 3.00E-54 | 3-methyladenine DNA glycosylase [Caldilinea aerophila DSM 14535 = NBRC 104270] |
| trEMBL | tr|V7BVU6|V7BVU6_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW21148.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01083 | 5941 | 9089 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01246 | tag | EC:3.2.2.20 | Base excision repair | map03410 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001083s00026394.1 | PF03352.8 | Adenine_glyco | 213 | 376 | 1.00E-55 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.379 |
| SRR1783600 | control | 6.281 |
| SRR1783602 | moderate drought stress | 4.316 |
| SRR1811619 | moderate drought stress | 4.211 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.056 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.058 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.056 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.057 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.656 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.809 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 27.346 |
| SRR2868004 | Drought Stress(Tissue:root) | 16.511 |
| SRR2967015 | Control (Tissue:root) | 23.382 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.986 |
| SRR9715740 | Leave | 2.152 |
| SRR9715741 | Leave | 2.933 |
| SRR9715739 | Root | 2.170 |
| SRR9715742 | Root | 1.976 |
| SRR9715743 | Root | 2.135 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.737 |
| SRR8749028 | MeJA induced 9h | 2.289 |
| SRR8749029 | MeJA induced 9h | 0.701 |
| SRR8749030 | Uninduced | 0.258 |
| SRR8749031 | Uninduced | 0.072 |
| SRR8749032 | Uninduced | 0.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.098 |
| SRR8400027 | Control-Root | 9.938 |