Gene detail information of Glyur001086s00029533.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G65930.10cytosolic NADP+-dependent isocitrate dehydrogenase
NRXP_003595878.10Isocitrate dehydrogenase [Medicago truncatula]
COGNP_970434.10isocitrate dehydrogenase [Bdellovibrio bacteriovorus HD100]
Swissprottr|P50218|IDHC_TOBAC0Isocitrate dehydrogenase [NADP]
trEMBLtr|G7IT36|G7IT36_MEDTR0Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold010862009725940+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00031IDH1, IDH2, icd EC:1.1.1.42 Carbon metabolism map01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cycle (TCA cycle)map00020
Carbon fixation pathways in prokaryotesmap00720
Glutathione metabolismmap00480
Peroxisomemap04146


Gene Ontology

biological_process

GO:0006102  isocitrate metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004450  isocitrate dehydrogenase (NADP+) activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001086s00029533.1PF00180.15Iso_dh84072.10E-76


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.191
SRR1783600control10.038
SRR1783602moderate drought stress8.114
SRR1811619moderate drought stress7.829

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain18.714
DRR006520Root Summer glycyrrhizin high producing strain18.610
DRR006521Root Winter glycyrrhizin high producing strain19.977
DRR006522Root Winter glycyrrhizin high producing strain19.418
DRR006523Root Summer glycyrrhizin low producing strain28.596
DRR006524Root Summer glycyrrhizin low producing strain27.954
DRR006525Leaf Summer glycyrrhizin high producing strain10.237
DRR006526Leaf Summer glycyrrhizin high producing strain10.911

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)52.220
SRR2868004Drought Stress(Tissue:root)62.687
SRR2967015Control (Tissue:root)50.312

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.364
SRR9715740Leave12.959
SRR9715741Leave15.664
SRR9715739Root7.867
SRR9715742Root20.513
SRR9715743Root17.911

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h27.676
SRR8749028MeJA induced 9h41.292
SRR8749029MeJA induced 9h32.888
SRR8749030Uninduced29.118
SRR8749031Uninduced15.751
SRR8749032Uninduced18.634

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root29.624
SRR8400027Control-Root30.456

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved