Gene detail information of Glyur001086s00029539.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G10670.4 | 0 | ATP-citrate lyase A-1 |
| NR | XP_004488606.1 | 0 | PREDICTED: ATP-citrate synthase alpha chain protein 2-like isoform X1 [Cicer arietinum] |
| COG | YP_004151630.1 | 4.00E-135 | ATP-citrate synthase (ATP-citrate (pro-S-)-lyase)(citrate cleavage enzyme) [Thermovibrio ammonificans HB-1] |
| Swissprot | tr|Q9SGY2|ACLA1_ARATH | 0 | ATP-citrate synthase alpha chain protein 1 |
| trEMBL | tr|G7IT44|G7IT44_MEDTR | 0 | ATP-citrate synthase alpha chain protein {ECO:0000313|EMBL:AES66137.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01086 | 45460 | 49552 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01648 | ACLY | EC:2.3.3.8 | Citrate cycle (TCA cycle) | map00020 |
| Carbon fixation pathways in prokaryotes | map00720 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001086s00029539.1 | PF08442.5 | ATP-grasp_2 | 43 | 240 | 1.60E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 34.589 |
| SRR1783600 | control | 34.379 |
| SRR1783602 | moderate drought stress | 15.489 |
| SRR1811619 | moderate drought stress | 15.199 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 41.232 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 40.448 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.232 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.157 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.381 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.612 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.857 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.493 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 175.466 |
| SRR2868004 | Drought Stress(Tissue:root) | 54.356 |
| SRR2967015 | Control (Tissue:root) | 61.313 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 22.897 |
| SRR9715740 | Leave | 16.443 |
| SRR9715741 | Leave | 11.790 |
| SRR9715739 | Root | 11.741 |
| SRR9715742 | Root | 49.127 |
| SRR9715743 | Root | 40.686 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 23.660 |
| SRR8749028 | MeJA induced 9h | 23.676 |
| SRR8749029 | MeJA induced 9h | 27.679 |
| SRR8749030 | Uninduced | 11.756 |
| SRR8749031 | Uninduced | 6.403 |
| SRR8749032 | Uninduced | 6.248 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 59.207 |
| SRR8400027 | Control-Root | 64.435 |