Gene detail information of Glyur001087s00023145.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G66520.19.00E-127formyltransferase, putative
NRKEH24713.10methionyl-tRNA formyltransferase [Medicago truncatula]
COGYP_002940464.11.00E-44methionyl-tRNA formyltransferase [Kosmotoga olearia TBF 19.5.1]
Swissprottr|F4JP46|PURU2_ARATH1.00E-06Formyltetrahydrofolate deformylase 2, mitochondrial (Precursor)
trEMBLtr|A0A072U6C9|A0A072U6C9_MEDTR0Methionyl-tRNA formyltransferase {ECO:0000313|EMBL:KEH24713.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0108710405464+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00604MTFMT, fmt EC:2.1.2.9 One carbon pool by folate map00670
Aminoacyl-tRNA biosynthesismap00970


Gene Ontology

biological_process

GO:0009058  biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0016742  hydroxymethyl-, formyl- and related transferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001087s00023145.1PF00551.14Formyl_trans_N422142.40E-31
Glyur001087s00023145.1PF02911.13Formyl_trans_C2613264.90E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.207
SRR1783600control5.214
SRR1783602moderate drought stress8.704
SRR1811619moderate drought stress8.304

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.702
DRR006520Root Summer glycyrrhizin high producing strain7.148
DRR006521Root Winter glycyrrhizin high producing strain14.848
DRR006522Root Winter glycyrrhizin high producing strain14.331
DRR006523Root Summer glycyrrhizin low producing strain7.015
DRR006524Root Summer glycyrrhizin low producing strain7.096
DRR006525Leaf Summer glycyrrhizin high producing strain10.390
DRR006526Leaf Summer glycyrrhizin high producing strain10.521

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)10.510
SRR2868004Drought Stress(Tissue:root)9.519
SRR2967015Control (Tissue:root)10.193

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.689
SRR9715740Leave12.022
SRR9715741Leave7.313
SRR9715739Root2.983
SRR9715742Root4.331
SRR9715743Root3.476

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.720
SRR8749028MeJA induced 9h9.587
SRR8749029MeJA induced 9h8.098
SRR8749030Uninduced3.128
SRR8749031Uninduced2.318
SRR8749032Uninduced3.081

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.002
SRR8400027Control-Root11.538

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved