Gene detail information of Glyur001087s00023157.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G23430.20Transducin/WD40 repeat-like superfamily protein
NRXP_006603797.10PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog [Glycine max]
COGYP_004050921.11.00E-40wd40 repeat, subgroup [Calditerrivibrio nitroreducens DSM 19672]
Swissprottr|Q8H0T9|KTNB1_ARATH0Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255|HAMAP-Rule:MF_03022}
trEMBLtr|K7MVR8|K7MVR8_SOYBN0Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000256|HAMAP-Rule:MF_03022}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold010874321953940-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0051013  microtubule severing


cellular_component

GO:0008352  katanin complex


molecular_function

GO:0005515  protein binding

GO:0008017  microtubule binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001087s00023157.1PF00400.27WD409440.0001
Glyur001087s00023157.1PF00400.27WD4053870.00027
Glyur001087s00023157.1PF00400.27WD40921291.80E-11
Glyur001087s00023157.1PF00400.27WD401351697.20E-11
Glyur001087s00023157.1PF00400.27WD401932313.70E-11
Glyur001087s00023157.1PF13925.1Katanin_con806026822.80E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.384
SRR1783600control8.420
SRR1783602moderate drought stress7.794
SRR1811619moderate drought stress7.590

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.488
DRR006520Root Summer glycyrrhizin high producing strain7.448
DRR006521Root Winter glycyrrhizin high producing strain3.859
DRR006522Root Winter glycyrrhizin high producing strain3.404
DRR006523Root Summer glycyrrhizin low producing strain5.757
DRR006524Root Summer glycyrrhizin low producing strain5.597
DRR006525Leaf Summer glycyrrhizin high producing strain3.086
DRR006526Leaf Summer glycyrrhizin high producing strain3.246

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)26.044
SRR2868004Drought Stress(Tissue:root)20.169
SRR2967015Control (Tissue:root)20.854

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.732
SRR9715740Leave3.816
SRR9715741Leave5.365
SRR9715739Root1.456
SRR9715742Root8.414
SRR9715743Root7.000

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.012
SRR8749028MeJA induced 9h15.501
SRR8749029MeJA induced 9h5.304
SRR8749030Uninduced3.143
SRR8749031Uninduced1.295
SRR8749032Uninduced1.391

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.375
SRR8400027Control-Root28.458

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved