Gene detail information of Glyur001088s00027869.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G65930.10cytosolic NADP+-dependent isocitrate dehydrogenase
NRXP_004490788.10PREDICTED: isocitrate dehydrogenase [NADP], chloroplastic-like [Cicer arietinum]
COGYP_006873138.10isocitrate dehydrogenase, NADP-dependent [Emticicia oligotrophica DSM 17448]
Swissprottr|Q06197|IDHC_SOYBN0Isocitrate dehydrogenase [NADP]
trEMBLtr|C6T857|C6T857_SOYBN0Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold010881840623492+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00031IDH1, IDH2, icd EC:1.1.1.42 Carbon metabolism map01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cycle (TCA cycle)map00020
Carbon fixation pathways in prokaryotesmap00720
Glutathione metabolismmap00480
Peroxisomemap04146


Gene Ontology

biological_process

GO:0006102  isocitrate metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0000287  magnesium ion binding

GO:0004450  isocitrate dehydrogenase (NADP+) activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287  NAD binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001088s00027869.1PF00180.15Iso_dh744691.30E-95


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control57.502
SRR1783600control58.082
SRR1783602moderate drought stress41.208
SRR1811619moderate drought stress41.652

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain131.808
DRR006520Root Summer glycyrrhizin high producing strain129.762
DRR006521Root Winter glycyrrhizin high producing strain94.703
DRR006522Root Winter glycyrrhizin high producing strain91.148
DRR006523Root Summer glycyrrhizin low producing strain100.120
DRR006524Root Summer glycyrrhizin low producing strain99.251
DRR006525Leaf Summer glycyrrhizin high producing strain74.627
DRR006526Leaf Summer glycyrrhizin high producing strain74.040

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)409.274
SRR2868004Drought Stress(Tissue:root)341.680
SRR2967015Control (Tissue:root)293.156

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave78.062
SRR9715740Leave55.806
SRR9715741Leave88.235
SRR9715739Root57.809
SRR9715742Root108.447
SRR9715743Root98.649

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h442.404
SRR8749028MeJA induced 9h353.703
SRR8749029MeJA induced 9h477.316
SRR8749030Uninduced615.868
SRR8749031Uninduced868.622
SRR8749032Uninduced602.771

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root268.011
SRR8400027Control-Root217.307

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved