Gene detail

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Gene detail information of Glyur001089s00021499.3

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G10940.1	2.00E-144	Protein kinase superfamily protein
NR	KEH35656.1	0	sucrose non-fermenting-like kinase 2 family protein [Medicago truncatula]
COG	NP_109936.1	2.00E-16	Ser/Thr/Tyr protein kinase [Mycoplasma pneumoniae M129]
Swissprot	tr\|Q7XQP4\|SAPK7_ORYSJ	0	Serine/threonine-protein kinase SAPK7
trEMBL	tr\|A0A072V1U0\|A0A072V1U0_MEDTR	0	Sucrose non-fermenting-like kinase 2 family protein {ECO:0000313\|EMBL:KEH35656.1}

Sequence

Transcript Sequence

>Glyur001089s00021499.3
GATCCATTAATTAGCGATGAACACTGCACTTTCATAATCCACACACAGAGCTCAAAAACCTCTGAATGATTGACGATTTTTGACGGATAAAACAAAACGCGAAAACAAACGTCGCTGAAAGACAAATATAACCATTCCCTTCACCACCAGGCTCATGGATTCCCATTCCCATGCTCTCTCCTGTTCTTTCCCAATTTTCTAAACGCTCTTCTCCCTATCGCTCTTTTTCTATGTACAGGAGAAAATCACGAAAGAAGCGACTGTTTCCGTGAAAGCGACCTACTTTGGATACCCTTTTGATCAAATTGCAGAATAGAATAGGATGGTCGTGTAAATTCCAATTCGATTTGTTAATTGAGGTTGGTGGGGTGTGTGTTGTGTTGGTATTAGCAATTACTATGGACAAGTACGAGGCTGTCAAGGATTTGGGAGCTGGGAATTTTGGGGTGGCTAGGCTTATGAGGAACAAGGTCACCAAGGAGCTTGTCGCCATGAAATACATCGAGCGTGGCCACANGATTGATGAGAATGTTGCAAGGGAGATTATGAACCACAGGTCCCTTCGGCATCCCAATATAATTCGTTTCAAGGAGGCAGGGAATTCACTTCTCTTATTTGCGTTGGTTGAGAATTACACATGGAATCATGTGCTCCTGTTTGTTTCAATGGGATTTTGATTTTGCAGGTGGTTTTGACTACCACTCATTTAGCAATAGTGATGGAGTATGCAGCTGGAGGAGAGCTCTTTGAGAGGATATGCAATGCTGGCAGGTTCAGTGAAGATGAGGCCAGGTATTTCTTTCAGCAGCTGATCTCCGGTGTCCATTTCTGTCATACCATGGTAGATTTGTGCTCAAGTTCGAGAGATTTGAAGCTAGAAAATACCCTTTTAGATGGAAGTCCTGCACCTCGCTTAAAAATTTGTGACTTTGGTTATTCCAAGTCATCTTTGCTGCATTCACGACCCAAATCAACTGTTGGAACACCAGCTTATATAGCACCAGAGGTTCTTTCTAGGCGGGAGTATGATGGAAAGATGGCTGATGTATGGTCATGTGGGGTGACTCTTTATGTCATGCTGGTTGGAGCATATCCCTTTGAGGACCAGGATGACCCTAGGAATTTTAGGAAAACAATTCAGCGTATAATGGCCATTCAATACAAAATCCCTGATTATGTTCACATATCTCAAGATTGCAGACACCTTATCTCTCGTATATTTGTTGCAAATCCATTGAGGAGAATTACTCTTAAGGAAATTAAGAACCATCCATGGTTTTTAAAGAATCTTCCAAGGGAGCTAACTGAATCAGCTCAAGCTATCTATTACCAGAGAGACAATCCAAGCTTTCATCTACAAAGTGTGGAGGAGATAATGAAAATTGTGGGAGAGGCAAGAAACCCACCTCCAGTATCTAGGCCTGTCAAGGGTTTTGGCTGGGAAGGTGAAGAAGAGGAAGGGGCAGAAGATTTGGACGCGGAATTGGAGGAAGAGGAGAATGAAGAAGACGATGAGTACGATAAGAGGGTCAAAGAGGTTCATGCAAGTGGAGAATTCAAAATTAGTTAAGCAGTAAGCACTCAAATTCTTGTGTACTTGTTATAAATATTTACCTTTTAGAAGTCACCTTTATTTTTTTTCCTATTGTGTAGACAAGAAGAAGTCACCTATTCATGTAAATTATAATTATGGCTCTGTTGTAATTTTGTGTGTATCACAATGGACGCTATTTATGAGAACAATACTTGTCTCAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01089	1195	5002	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14498	SNRK2	EC:2.7.11.1	MAPK signaling pathway - plant	map04016
K14498	SNRK2	EC:2.7.11.1	Plant hormone signal transduction	map04075

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001089s00021499.3	PF00069.20	Pkinase	12	214	3.90E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	33.133
SRR1783600	control	33.149
SRR1783602	moderate drought stress	31.463
SRR1811619	moderate drought stress	31.601

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	53.449
DRR006520	Root Summer glycyrrhizin high producing strain	53.773
DRR006521	Root Winter glycyrrhizin high producing strain	175.919
DRR006522	Root Winter glycyrrhizin high producing strain	172.068
DRR006523	Root Summer glycyrrhizin low producing strain	71.095
DRR006524	Root Summer glycyrrhizin low producing strain	71.340
DRR006525	Leaf Summer glycyrrhizin high producing strain	31.973
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.086

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	57.664
SRR2868004	Drought Stress(Tissue:root)	66.878
SRR2967015	Control (Tissue:root)	68.878

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	76.177
SRR9715740	Leave	66.477
SRR9715741	Leave	88.668
SRR9715739	Root	9.190
SRR9715742	Root	41.116
SRR9715743	Root	35.683

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.146
SRR8749028	MeJA induced 9h	67.490
SRR8749029	MeJA induced 9h	61.183
SRR8749030	Uninduced	107.170
SRR8749031	Uninduced	109.645
SRR8749032	Uninduced	138.753

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	78.135
SRR8400027	Control-Root	88.219