Gene detail information of Glyur001090s00029971.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G60460.1 | 3.00E-61 | myb-like HTH transcriptional regulator family protein |
| NR | XP_007134506.1 | 1.56E-148 | hypothetical protein PHAVU_010G053200g [Phaseolus vulgaris] |
| Swissprot | tr|Q0JIC2|GAM1_ORYSJ | 1.00E-35 | Transcription factor GAMYB |
| trEMBL | tr|V7AMK3|V7AMK3_PHAVU | 6.00E-149 | Uncharacterized protein {ECO:0000313|EMBL:ESW06500.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01090 | 52257 | 54136 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001090s00029971.1 | PF00249.26 | Myb_DNA-binding | 13 | 58 | 8.00E-09 |
| Glyur001090s00029971.1 | PF00249.26 | Myb_DNA-binding | 69 | 108 | 3.40E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.038 |
| SRR1783600 | control | 0.038 |
| SRR1783602 | moderate drought stress | 0.156 |
| SRR1811619 | moderate drought stress | 0.193 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.143 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.220 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.689 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.769 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.114 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.113 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.369 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.192 |
| SRR2967015 | Control (Tissue:root) | 0.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.285 |
| SRR9715740 | Leave | 0.158 |
| SRR9715741 | Leave | 0.192 |
| SRR9715739 | Root | 0.153 |
| SRR9715742 | Root | 0.175 |
| SRR9715743 | Root | 0.065 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.069 |
| SRR8400027 | Control-Root | 0.098 |