Gene detail information of Glyur001092s00028389.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G54280.10DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases
NRXP_003540105.10PREDICTED: TATA-binding protein-associated factor BTAF1-like isoform X1 [Glycine max]
COGYP_004651865.12.00E-76hypothetical protein PUV_10610 [Parachlamydia acanthamoebae UV-7]
Swissprottr|B5BT18|BTAF1_ARATH0TATA-binding protein-associated factor BTAF1
trEMBLtr|K7LS80|K7LS80_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G00450.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold010922374545971+


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0005488  binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001092s00028389.1PF13513.1HEAT_EZ5676180.00029
Glyur001092s00028389.1PF12054.3DUF353578112502.80E-93
Glyur001092s00028389.1PF00176.18SNF2_N146917779.20E-66
Glyur001092s00028389.1PF00271.26Helicase_C186719417.80E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.762
SRR1783600control5.754
SRR1783602moderate drought stress5.269
SRR1811619moderate drought stress5.164

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.907
DRR006520Root Summer glycyrrhizin high producing strain6.761
DRR006521Root Winter glycyrrhizin high producing strain6.716
DRR006522Root Winter glycyrrhizin high producing strain6.644
DRR006523Root Summer glycyrrhizin low producing strain5.917
DRR006524Root Summer glycyrrhizin low producing strain5.922
DRR006525Leaf Summer glycyrrhizin high producing strain6.024
DRR006526Leaf Summer glycyrrhizin high producing strain6.069

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.760
SRR2868004Drought Stress(Tissue:root)16.361
SRR2967015Control (Tissue:root)15.429

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.133
SRR9715740Leave9.680
SRR9715741Leave12.268
SRR9715739Root1.577
SRR9715742Root12.385
SRR9715743Root11.349

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.124
SRR8749028MeJA induced 9h10.950
SRR8749029MeJA induced 9h5.712
SRR8749030Uninduced6.517
SRR8749031Uninduced6.091
SRR8749032Uninduced4.223

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.613
SRR8400027Control-Root15.053

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved