Gene detail information of Glyur001094s00031545.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G11110.18.00E-18RING/U-box superfamily protein
NRXP_003600944.13.30E-92Zinc/RING finger protein [Medicago truncatula]
Swissprottr|Q9SRM0|ATL66_ARATH8.00E-32RING-H2 finger protein ATL66
trEMBLtr|G7JBV5|G7JBV5_MEDTR1.00E-92Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:AES71195.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold010949882278-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001094s00031545.1PF13639.1zf-RING_21101531.10E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.479
SRR1783600control15.732
SRR1783602moderate drought stress15.216
SRR1811619moderate drought stress15.133

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.065
DRR006520Root Summer glycyrrhizin high producing strain8.024
DRR006521Root Winter glycyrrhizin high producing strain225.161
DRR006522Root Winter glycyrrhizin high producing strain217.371
DRR006523Root Summer glycyrrhizin low producing strain7.533
DRR006524Root Summer glycyrrhizin low producing strain9.956
DRR006525Leaf Summer glycyrrhizin high producing strain10.347
DRR006526Leaf Summer glycyrrhizin high producing strain11.063

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.847
SRR2868004Drought Stress(Tissue:root)19.701
SRR2967015Control (Tissue:root)20.113

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.798
SRR9715740Leave1.503
SRR9715741Leave1.349
SRR9715739Root16.138
SRR9715742Root16.642
SRR9715743Root15.959

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.367
SRR8749028MeJA induced 9h0.079
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.207
SRR8749031Uninduced0.000
SRR8749032Uninduced0.326

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root9.447
SRR8400027Control-Root5.471

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved