Gene detail information of Glyur001094s00031554.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G46510.1 | 3.00E-89 | plant U-box 13 |
| NR | XP_007141746.1 | 0 | hypothetical protein PHAVU_008G222100g [Phaseolus vulgaris] |
| COG | YP_001957949.1 | 2.00E-14 | hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2] |
| Swissprot | tr|Q9SNC6|PUB13_ARATH | 4.00E-120 | U-box domain-containing protein 13 |
| trEMBL | tr|V7B851|V7B851_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW13740.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01094 | 45467 | 47521 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U_box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001094s00031554.1 | PF04564.10 | U-box | 281 | 352 | 1.40E-22 |
| Glyur001094s00031554.1 | PF00514.18 | Arm | 427 | 463 | 1.50E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.053 |
| SRR1783600 | control | 0.054 |
| SRR1783602 | moderate drought stress | 0.055 |
| SRR1811619 | moderate drought stress | 0.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.158 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.157 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.162 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.159 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.274 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.314 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.250 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.140 |
| SRR2967015 | Control (Tissue:root) | 0.144 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.031 |
| SRR9715741 | Leave | 0.032 |
| SRR9715739 | Root | 0.144 |
| SRR9715742 | Root | 0.090 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.069 |
| SRR8749028 | MeJA induced 9h | 0.102 |
| SRR8749029 | MeJA induced 9h | 0.279 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.534 |
| SRR8400027 | Control-Root | 1.638 |