Gene detail information of Glyur001100s00028600.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G58900.1 | 5.00E-66 | Homeodomain-like transcriptional regulator |
| NR | XP_003615578.1 | 1.65E-162 | DnaJ homolog subfamily C member [Medicago truncatula] |
| Swissprot | tr|Q8S9H7|DIV_ANTMA | 4.00E-108 | Transcription factor DIVARICATA |
| trEMBL | tr|G7K698|G7K698_MEDTR | 6.00E-163 | MYB transcription factor MYB51 {ECO:0000313|EMBL:AES98536.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01100 | 24860 | 27641 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001100s00028600.1 | PF00249.26 | Myb_DNA-binding | 30 | 75 | 3.90E-07 |
| Glyur001100s00028600.1 | PF00249.26 | Myb_DNA-binding | 138 | 182 | 1.30E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 46.161 |
| SRR1783600 | control | 46.520 |
| SRR1783602 | moderate drought stress | 42.805 |
| SRR1811619 | moderate drought stress | 42.734 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 28.705 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 28.364 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.716 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.440 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.500 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.473 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.272 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.132 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.286 |
| SRR2967015 | Control (Tissue:root) | 7.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 13.043 |
| SRR9715740 | Leave | 14.979 |
| SRR9715741 | Leave | 14.987 |
| SRR9715739 | Root | 14.302 |
| SRR9715742 | Root | 16.823 |
| SRR9715743 | Root | 17.436 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.785 |
| SRR8749028 | MeJA induced 9h | 2.436 |
| SRR8749029 | MeJA induced 9h | 0.841 |
| SRR8749030 | Uninduced | 1.781 |
| SRR8749031 | Uninduced | 0.241 |
| SRR8749032 | Uninduced | 0.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 27.635 |
| SRR8400027 | Control-Root | 34.637 |