Gene detail

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Gene detail information of Glyur001101s00022437.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G47870.1	3.00E-66	winged-helix DNA-binding transcription factor family protein
NR	XP_004500945.1	2.11E-142	PREDICTED: transcription factor E2FC-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9FV70\|E2FC_ARATH	1.00E-79	Transcription factor E2FC
trEMBL	tr\|I1JT39\|I1JT39_SOYBN	1.00E-133	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G02720.5}

Sequence

Transcript Sequence

>Glyur001101s00022437.1
ATGTTTTCTTCCCTACATTCTGTTTTGTTAATGCATGCTTTGTCGAGTCAAACATATGAAATCAATAATAATGTCGAAGCATCTCCCAGTTCGAGCAAGACGGTTAATCTTCCACCTCTTCTCCAAACCGAGTCCGGCCAAAGAGGAAATCATCATGGTAAATCAAGAGTTTCAAGGAATGCAAAATCTAGGACTCAAAAATCAAATGCCGGATTGTTAACCAAGAAATTTCTCAGCTTGATCCAGGATGCTAAGGATGGTACCCTTGATCTAAATAAAACTGCCGAGATCTTGGAGGTTCAAAAAAGGAGAATTTATGACATTACGAATGTTCTCGAAGGAATAAGATTGATAGAGAAAACTTCAAAGAACCATATACGGTGGAAGGGATGTGATGGATTTGGGCCACGAGAACTGGAGGATCAAGTTAATAGTCTAAAGGCTGAAGTTGAAAGTCTATATGCTGAAGAAAGCAAACTTGAGGAGTGCATAAGGGAAAAGAAGGAGCTTATCAGAAACCTGGAGGAAAGAGAAAACTCTCGAAAGTTCCTTTTTTTAACCAAAGAAGATATTCTTACCCTTCCATGCTTCCAGAATCAAGAACTTATTGCAATCAATGCTCCAAAAGCTAGTTTCATTGAGGTCCCTAATCCTGACGAGTTTCTAAGTGACTCAAATAACCAGGAAATAGCCTTCCATCAAAGGCAGTACAAGATGACCGTTAGAAGTGCAACTGGACCAATATTTGTATATCTCTTGAGGTGCTTCTCTTTACTCTGTTCTTTATGCGCTTGTTTGTTATTATCCTTTCTCATTGCTGGTTTAAACAAGCACGACTGCAAGTTTGANAATGATAGTTTCAAGCCGGTGAAATTAATGGATAGTTTTAGTTCGTTGGGCTCAGAGGCATTTGGAATTCAAGAAATTACTCCTATGGATTTTGATGTGGATCATGACTATTGGTTTCAATCCGATCCTCAATTGAGCCTAACAGAATTGTGGGGTAGCAATTCAAACTGTAAATGCTAACTCTCTTTTTTCAGACAAATAATTTCAAGGAGAGAATAAGAAGAGAAGATGAAAGTTCAAGGGGGAATAAGAAAGAAGATGAAAGATTTTTTTTTGGATAAGAGAAGACGAAAGATGAAAGTTGAAGGAGGGAATTGGGTGTGGATAGGAAGCCTGTTGACCGGCAAAAAATTGTTCTTTTATTTATTGAGGAATGATTTTTTTTTTTAATTTGTCTTGCCC

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01101	83665	86699	+

Gene family

Gene family	subfamily
Transcription Factors Family	E2F-DP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component GO:0005667 transcription factor complex molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001101s00022437.1	PF02319.15	E2F_TDP	71	130	3.80E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.131
SRR1783600	control	0.070
SRR1783602	moderate drought stress	0.191
SRR1811619	moderate drought stress	0.165

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.415
DRR006520	Root Summer glycyrrhizin high producing strain	1.205
DRR006521	Root Winter glycyrrhizin high producing strain	1.147
DRR006522	Root Winter glycyrrhizin high producing strain	0.937
DRR006523	Root Summer glycyrrhizin low producing strain	0.665
DRR006524	Root Summer glycyrrhizin low producing strain	0.687
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.048

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.655
SRR2868004	Drought Stress(Tissue:root)	0.480
SRR2967015	Control (Tissue:root)	0.501

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.000
SRR9715740	Leave	0.096
SRR9715741	Leave	0.000
SRR9715739	Root	0.059
SRR9715742	Root	0.023
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.480
SRR8749028	MeJA induced 9h	3.269
SRR8749029	MeJA induced 9h	4.640
SRR8749030	Uninduced	0.861
SRR8749031	Uninduced	0.415
SRR8749032	Uninduced	0.301

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.261
SRR8400027	Control-Root	0.503