Gene detail information of Glyur001104s00026652.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G06850.19.00E-19xyloglucan endotransglucosylase/hydrolase 4
NRXP_008232877.17.45E-108PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 27 [Prunus mume]
COGNP_391786.16.00E-20beta-glucanase [Bacillus subtilis subsp. subtilis str. 168]
Swissprottr|Q8LDS2|XTH27_ARATH2.00E-27Probable xyloglucan endotransglucosylase/hydrolase protein 27 (Precursor)
trEMBLtr|M5X4R2|M5X4R2_PRUPE2.00E-107Uncharacterized protein {ECO:0000313|EMBL:EMJ21042.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold01104925911432+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH16


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001104s00026652.1PF00722.16Glyco_hydro_16301835.50E-39


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.339
SRR1783600control18.350
SRR1783602moderate drought stress21.228
SRR1811619moderate drought stress21.930

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.394
DRR006520Root Summer glycyrrhizin high producing strain18.977
DRR006521Root Winter glycyrrhizin high producing strain6.204
DRR006522Root Winter glycyrrhizin high producing strain6.349
DRR006523Root Summer glycyrrhizin low producing strain19.322
DRR006524Root Summer glycyrrhizin low producing strain19.323
DRR006525Leaf Summer glycyrrhizin high producing strain5.518
DRR006526Leaf Summer glycyrrhizin high producing strain5.666

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.368
SRR2868004Drought Stress(Tissue:root)11.302
SRR2967015Control (Tissue:root)13.520

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.990
SRR9715740Leave0.955
SRR9715741Leave0.951
SRR9715739Root15.992
SRR9715742Root10.597
SRR9715743Root8.011

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.799
SRR8749028MeJA induced 9h3.355
SRR8749029MeJA induced 9h3.585
SRR8749030Uninduced0.911
SRR8749031Uninduced0.076
SRR8749032Uninduced1.454

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.551
SRR8400027Control-Root10.339

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved