Gene detail information of Glyur001104s00026653.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G33565.1 | 3.00E-16 | RING/U-box superfamily protein |
| NR | KHN29403.1 | 1.65E-100 | E3 ubiquitin-protein ligase ATL59 [Glycine soja] |
| Swissprot | tr|Q8LFY8|ATL54_ARATH | 6.00E-17 | RING-H2 finger protein ATL54 |
| trEMBL | tr|C6TGF9|C6TGF9_SOYBN | 3.00E-100 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G40020.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01104 | 12802 | 14725 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001104s00026653.1 | PF13639.1 | zf-RING_2 | 86 | 129 | 2.80E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.450 |
| SRR1783600 | control | 1.350 |
| SRR1783602 | moderate drought stress | 1.115 |
| SRR1811619 | moderate drought stress | 1.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.696 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.636 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.221 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.959 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.596 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.448 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.799 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.694 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.562 |
| SRR2868004 | Drought Stress(Tissue:root) | 12.797 |
| SRR2967015 | Control (Tissue:root) | 12.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 14.917 |
| SRR9715740 | Leave | 37.200 |
| SRR9715741 | Leave | 17.269 |
| SRR9715739 | Root | 1.132 |
| SRR9715742 | Root | 2.229 |
| SRR9715743 | Root | 1.531 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.758 |
| SRR8749028 | MeJA induced 9h | 2.377 |
| SRR8749029 | MeJA induced 9h | 3.143 |
| SRR8749030 | Uninduced | 3.426 |
| SRR8749031 | Uninduced | 2.303 |
| SRR8749032 | Uninduced | 2.031 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.973 |
| SRR8400027 | Control-Root | 3.209 |