Gene detail information of Glyur001104s00026661.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G25440.11.00E-43zinc finger WD40 repeat protein 1
NRXP_006595554.16.81E-105PREDICTED: uncharacterized protein LOC100787799 isoform X1 [Glycine max]
COGYP_007115421.13.00E-06WD40 repeat-containing protein [Oscillatoria nigro-viridis PCC 7112]
Swissprottr|Q9FNZ2|C3H48_ARATH1.00E-52Zinc finger CCCH domain-containing protein 48
trEMBLtr|I1MB97|I1MB97_SOYBN3.00E-105Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G37100.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011045231253760+


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001104s00026661.1PF00400.27WD401301652.00E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.097
SRR1783600control0.134
SRR1783602moderate drought stress0.050
SRR1811619moderate drought stress0.098

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.216
DRR006520Root Summer glycyrrhizin high producing strain0.215
DRR006521Root Winter glycyrrhizin high producing strain0.321
DRR006522Root Winter glycyrrhizin high producing strain0.211
DRR006523Root Summer glycyrrhizin low producing strain0.560
DRR006524Root Summer glycyrrhizin low producing strain0.368
DRR006525Leaf Summer glycyrrhizin high producing strain0.275
DRR006526Leaf Summer glycyrrhizin high producing strain0.246

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.416
SRR2868004Drought Stress(Tissue:root)0.616
SRR2967015Control (Tissue:root)1.157

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.393
SRR9715740Leave0.433
SRR9715741Leave1.048
SRR9715739Root0.025
SRR9715742Root0.708
SRR9715743Root0.094

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.154
SRR8749028MeJA induced 9h2.757
SRR8749029MeJA induced 9h0.336
SRR8749030Uninduced0.103
SRR8749031Uninduced0.401
SRR8749032Uninduced0.061

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.245
SRR8400027Control-Root0.240

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved