Gene detail information of Glyur001104s00026662.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G25440.1 | 1.00E-42 | zinc finger WD40 repeat protein 1 |
| NR | XP_004513959.1 | 2.27E-81 | PREDICTED: zinc finger CCCH domain-containing protein 48-like [Cicer arietinum] |
| COG | YP_007113295.1 | 2.00E-09 | WD40 repeat-containing protein [Oscillatoria nigro-viridis PCC 7112] |
| Swissprot | tr|Q9FNZ2|C3H48_ARATH | 8.00E-62 | Zinc finger CCCH domain-containing protein 48 |
| trEMBL | tr|A0A072TN24|A0A072TN24_MEDTR | 3.00E-81 | F-box and WD40 domain protein, putative {ECO:0000313|EMBL:KEH18812.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01104 | 56363 | 57468 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001104s00026662.1 | PF00400.27 | WD40 | 1 | 15 | 0.0048 |
| Glyur001104s00026662.1 | PF00400.27 | WD40 | 20 | 54 | 2.50E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.750 |
| SRR1783600 | control | 6.312 |
| SRR1783602 | moderate drought stress | 8.331 |
| SRR1811619 | moderate drought stress | 8.511 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.878 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.504 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.391 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.372 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.567 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.923 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.630 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.515 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.151 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.955 |
| SRR2967015 | Control (Tissue:root) | 1.918 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.549 |
| SRR9715740 | Leave | 0.958 |
| SRR9715741 | Leave | 1.408 |
| SRR9715739 | Root | 1.681 |
| SRR9715742 | Root | 2.151 |
| SRR9715743 | Root | 1.704 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.376 |
| SRR8749028 | MeJA induced 9h | 0.220 |
| SRR8749029 | MeJA induced 9h | 0.040 |
| SRR8749030 | Uninduced | 0.039 |
| SRR8749031 | Uninduced | 0.467 |
| SRR8749032 | Uninduced | 1.382 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.353 |
| SRR8400027 | Control-Root | 3.212 |